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Uranium in PDB 1anv: Adenovirus 5 Dbp/Uranyl Fluoride Soak

Protein crystallography data

The structure of Adenovirus 5 Dbp/Uranyl Fluoride Soak, PDB code: 1anv was solved by P.N.Kanellopoulos, D.Tsernoglou, P.C.Van Der Vliet, P.A.Tucker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.700, 75.600, 60.600, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 31.4

Other elements in 1anv:

The structure of Adenovirus 5 Dbp/Uranyl Fluoride Soak also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Uranium Binding Sites:

The binding sites of Uranium atom in the Adenovirus 5 Dbp/Uranyl Fluoride Soak (pdb code 1anv). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 4 binding sites of Uranium where determined in the Adenovirus 5 Dbp/Uranyl Fluoride Soak, PDB code: 1anv:
Jump to Uranium binding site number: 1; 2; 3; 4;

Uranium binding site 1 out of 4 in 1anv

Go back to Uranium Binding Sites List in 1anv
Uranium binding site 1 out of 4 in the Adenovirus 5 Dbp/Uranyl Fluoride Soak


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Adenovirus 5 Dbp/Uranyl Fluoride Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U532

b:42.3
occ:1.00
OD1 A:ASP468 1.9 69.9 1.0
CG A:ASP468 3.1 65.2 1.0
OD1 A:ASN466 3.4 0.0 1.0
O A:HOH25 3.8 31.9 1.0
CB A:ASP468 3.9 20.5 1.0
OD2 A:ASP468 4.2 94.3 1.0
N A:ASP468 4.4 25.4 1.0
CA A:ASP468 4.4 22.6 1.0
C A:CYS467 4.5 24.5 1.0
CG A:ASN466 4.6 0.0 1.0
O A:CYS467 4.6 21.6 1.0

Uranium binding site 2 out of 4 in 1anv

Go back to Uranium Binding Sites List in 1anv
Uranium binding site 2 out of 4 in the Adenovirus 5 Dbp/Uranyl Fluoride Soak


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Adenovirus 5 Dbp/Uranyl Fluoride Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U533

b:56.8
occ:1.00
OE2 A:GLU298 2.4 23.7 1.0
OE1 A:GLU298 2.5 43.9 1.0
CD A:GLU298 2.5 32.7 1.0
C A:GLU298 3.1 55.1 1.0
OE1 A:GLN330 3.2 95.6 1.0
O A:GLU298 3.4 33.7 1.0
CA A:GLU298 3.5 48.9 1.0
N A:GLU298 3.5 92.4 1.0
CG A:GLU298 3.6 44.9 1.0
CB A:GLU298 3.7 49.8 1.0
CD A:GLN330 4.4 91.8 1.0
CG1 A:VAL296 4.8 0.0 1.0
C A:ILE297 4.8 97.6 1.0

Uranium binding site 3 out of 4 in 1anv

Go back to Uranium Binding Sites List in 1anv
Uranium binding site 3 out of 4 in the Adenovirus 5 Dbp/Uranyl Fluoride Soak


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Adenovirus 5 Dbp/Uranyl Fluoride Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U534

b:61.6
occ:1.00
OD1 A:ASP429 2.3 0.0 1.0
CG A:ASP429 2.7 0.0 1.0
OD2 A:ASP429 2.7 93.8 1.0
N A:LEU430 3.9 96.0 1.0
CB A:ASP429 4.0 96.1 1.0
CD1 A:LEU430 4.2 0.0 1.0
C A:ASP429 4.3 98.4 1.0
CA A:ASP429 4.4 94.7 1.0
CA A:LEU430 4.5 94.8 1.0
O A:ALA428 4.6 98.6 1.0
CB A:LEU430 4.7 95.0 1.0
O A:ASP429 5.0 97.2 1.0
N A:ASP429 5.0 94.3 1.0

Uranium binding site 4 out of 4 in 1anv

Go back to Uranium Binding Sites List in 1anv
Uranium binding site 4 out of 4 in the Adenovirus 5 Dbp/Uranyl Fluoride Soak


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Adenovirus 5 Dbp/Uranyl Fluoride Soak within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U535

b:57.5
occ:1.00
OE1 A:GLU225 2.4 0.0 1.0
OE2 A:GLU225 2.9 0.0 1.0
CD A:GLU225 2.9 0.0 1.0
CG A:GLU225 4.3 65.9 1.0
CB A:GLU225 4.6 44.5 1.0

Reference:

P.N.Kanellopoulos, D.Tsernoglou, P.C.Van Der Vliet, P.A.Tucker. Conformational Change of the Adenovirus Dna-Binding Protein Induced By Soaking Crystals with K3UO2F5 Solutions. Acta Crystallogr.,Sect.D V. 52 942 1996.
ISSN: ISSN 0907-4449
PubMed: 15299602
DOI: 10.1107/S0907444996005525
Page generated: Wed Dec 16 02:29:16 2020

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