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Uranium in PDB 1b05: Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys

Protein crystallography data

The structure of Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys, PDB code: 1b05 was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.550, 76.120, 70.500, 90.00, 90.00, 90.00
R / Rfree (%) 19.8 / 24.3

Uranium Binding Sites:

The binding sites of Uranium atom in the Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys (pdb code 1b05). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys, PDB code: 1b05:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b05

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Uranium binding site 1 out of 8 in the Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:16.9
occ:1.00
OD2 A:ASP323 2.4 11.7 1.0
CG A:ASP323 3.3 14.7 1.0
OD1 A:ASP323 3.5 11.7 1.0
CB A:ASP323 4.6 14.9 1.0
NZ A:LYS157 4.8 11.0 1.0

Uranium binding site 2 out of 8 in 1b05

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Uranium binding site 2 out of 8 in the Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:21.0
occ:1.00
U A:U1520 4.2 22.1 1.0

Uranium binding site 3 out of 8 in 1b05

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Uranium binding site 3 out of 8 in the Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:22.1
occ:1.00
OD2 A:ASP459 3.5 50.0 1.0
U A:U1519 4.2 21.0 1.0
CG A:ASP459 4.7 48.6 1.0
CB A:PRO153 4.9 19.3 1.0

Uranium binding site 4 out of 8 in 1b05

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Uranium binding site 4 out of 8 in the Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:27.2
occ:1.00
OE2 A:GLU251 2.4 25.5 1.0
OD1 A:ASP369 2.5 29.3 1.0
CD A:GLU251 3.5 29.4 1.0
CG A:ASP369 3.7 30.9 1.0
NZ A:LYS373 4.0 32.2 1.0
O A:HOH698 4.1 40.5 1.0
OE1 A:GLU251 4.4 30.0 1.0
CG A:GLU251 4.4 28.6 1.0
OD2 A:ASP369 4.5 33.4 1.0
CG2 A:VAL230 4.7 15.1 1.0
CB A:ASP369 4.7 25.4 1.0

Uranium binding site 5 out of 8 in 1b05

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Uranium binding site 5 out of 8 in the Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:22.4
occ:1.00
OD2 A:ASP362 2.4 13.0 1.0
OD2 A:ASP410 2.5 17.1 1.0
CG A:ASP362 3.2 13.3 1.0
CG A:ASP410 3.3 15.3 1.0
OD1 A:ASP410 3.5 16.4 1.0
OD1 A:ASP362 3.7 12.1 1.0
N A:ASP362 4.1 14.7 1.0
CB A:ASP362 4.4 13.0 1.0
NZ A:LYS281 4.5 33.4 1.0
CA A:PHE361 4.7 19.7 1.0
CB A:ASP410 4.7 14.8 1.0
C A:PHE361 4.8 18.2 1.0
CA A:ASP362 4.9 14.2 1.0

Uranium binding site 6 out of 8 in 1b05

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Uranium binding site 6 out of 8 in the Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:33.1
occ:1.00
OXT A:HIS517 2.7 20.8 1.0
O A:HIS517 2.8 24.5 1.0
C A:HIS517 3.1 21.7 1.0
U A:U1524 4.1 35.5 1.0
CA A:HIS517 4.6 21.4 1.0
O A:HOH635 4.8 22.6 1.0
CD2 A:HIS517 5.0 18.9 1.0

Uranium binding site 7 out of 8 in 1b05

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Uranium binding site 7 out of 8 in the Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:35.5
occ:1.00
U A:U1523 4.1 33.1 1.0

Uranium binding site 8 out of 8 in 1b05

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Uranium binding site 8 out of 8 in the Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Structure of Oligo-Peptide Binding Protein Complexed with Lys-Cys-Lys within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:36.4
occ:1.00
OD2 A:ASP11 2.4 23.5 1.0
CG A:ASP11 3.3 25.2 1.0
CB A:ASP11 3.6 22.1 1.0
OD1 A:ASP11 4.4 26.1 1.0
O A:HOH684 5.0 32.7 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein. J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Wed Dec 16 02:29:18 2020

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