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Uranium in PDB 1b0h: Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine

Protein crystallography data

The structure of Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine, PDB code: 1b0h was solved by T.G.Davies, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.961, 75.459, 70.584, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 22.4

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine (pdb code 1b0h). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine, PDB code: 1b0h:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b0h

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Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U901

b:23.1
occ:0.88
OD2 A:ASP323 2.4 21.4 1.0
CG A:ASP323 3.2 23.6 1.0
OD1 A:ASP323 3.4 24.4 1.0
O A:HOH1263 4.2 44.6 1.0
CB A:ASP323 4.6 22.4 1.0
O A:HOH1049 4.7 30.5 1.0
NZ A:LYS157 4.7 20.2 1.0

Uranium binding site 2 out of 8 in 1b0h

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Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U902

b:31.3
occ:0.85
O A:HOH921 2.6 19.8 1.0
U A:U1903 4.1 37.7 0.8
O A:HOH1015 4.7 27.8 1.0
O A:HOH994 4.8 26.3 1.0

Uranium binding site 3 out of 8 in 1b0h

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Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U903

b:37.7
occ:0.81
O A:HOH1015 2.4 27.8 1.0
O A:HOH994 2.5 26.3 1.0
U A:U1902 4.1 31.3 0.8
OD1 A:ASP459 4.2 52.8 1.0
OD2 A:ASP459 4.6 52.2 1.0
CG A:ASP459 4.7 51.0 1.0
O A:HOH921 4.8 19.8 1.0
O A:HOH1120 4.9 34.4 1.0

Uranium binding site 4 out of 8 in 1b0h

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Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U904

b:41.7
occ:0.60
OE1 A:GLU251 2.5 50.3 1.0
OD2 A:ASP369 3.7 34.1 1.0
CD A:GLU251 3.7 51.7 1.0
NZ A:LYS373 4.3 42.7 1.0
CG A:ASP369 4.5 32.0 1.0
CG A:GLU251 4.5 52.0 1.0
OE2 A:GLU251 4.6 51.5 1.0
CE A:LYS373 4.9 40.7 1.0
CG2 A:VAL230 4.9 25.1 1.0
CB A:ASP369 5.0 30.5 1.0

Uranium binding site 5 out of 8 in 1b0h

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Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U905

b:24.7
occ:0.86
OD1 A:ASP362 2.3 18.9 1.0
OD1 A:ASP410 2.3 17.0 1.0
CG A:ASP362 3.2 21.6 1.0
CG A:ASP410 3.3 21.1 1.0
OD2 A:ASP410 3.6 22.3 1.0
OD2 A:ASP362 3.8 23.7 1.0
NZ A:LYS281 4.0 34.7 1.0
O A:HOH1137 4.1 35.6 1.0
O A:HOH1130 4.2 35.2 1.0
N A:ASP362 4.3 22.2 1.0
CB A:ASP362 4.3 20.6 1.0
O A:HOH1011 4.5 27.5 1.0
CB A:ASP410 4.6 19.7 1.0
CA A:PHE361 4.9 23.0 1.0
CA A:ASP362 5.0 21.4 1.0
C A:PHE361 5.0 22.9 1.0

Uranium binding site 6 out of 8 in 1b0h

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Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U906

b:23.4
occ:0.31
OXT A:HIS517 2.7 34.1 1.0
O A:HIS517 3.4 36.1 1.0
C A:HIS517 3.4 33.5 1.0
U A:U1907 4.1 22.0 0.2
O A:HOH1312 4.7 22.4 0.5
CA A:HIS517 4.9 33.0 1.0

Uranium binding site 7 out of 8 in 1b0h

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Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U907

b:22.0
occ:0.23
U A:U1906 4.1 23.4 0.3
O A:HOH1076 4.7 31.8 1.0

Uranium binding site 8 out of 8 in 1b0h

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Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein Complexed with Lysyl- Napthylalanyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U908

b:36.1
occ:0.46
OD2 A:ASP11 2.3 39.4 1.0
CG A:ASP11 3.5 37.0 1.0
CB A:ASP11 3.9 33.6 1.0
OD1 A:ASP11 4.5 35.6 1.0

Reference:

T.G.Davies, R.E.Hubbard, J.R.Tame. Relating Structure to Thermodynamics: the Crystal Structures and Binding Affinity of Eight Oppa-Peptide Complexes. Protein Sci. V. 8 1432 1999.
ISSN: ISSN 0961-8368
PubMed: 10422831
Page generated: Wed Dec 16 02:29:18 2020

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