Uranium in the structure of Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex (pdb 1b1h)

The binding sites of Uranium atom in the structure of Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex (pdb code 1b1h). This binding sites where shown with 5.0 Angstroms radius around Uranium atom. The 1b1h structure was solved by T.G.DAVIES, J.R.H.TAME, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-1.8 Space group P212121 a (A) 109.722 b (A) 75.953 c (A) 70.424 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19 Rfree (%) 22 Uranium Binding Sites: Uranium binding site 1 out of 8 in 1b1h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Uranium in the PDB 1b1h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys157, A: Asp323, A: Hoh1061, conact list: Atom Atom Distance (A) U NZ A:Lys157 4.64 U CB A:Asp323 4.61 U OD2 A:Asp323 2.26 U OD1 A:Asp323 3.45 U CG A:Asp323 3.22 U O A:Hoh1061 4.93 interactive model: Uranium binding site 2 out of 8 in 1b1h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Uranium in the PDB 1b1h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ium1003, conact list: Atom Atom Distance (A) U U A:Ium1003 4.16 interactive model: Uranium binding site 3 out of 8 in 1b1h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Uranium in the PDB 1b1h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Pro153, A: Asp459, A: Arg462, A: Ium1002, A: Hoh1156, conact list: Atom Atom Distance (A) U CB A:Pro153 4.91 U OD2 A:Asp459 4.51 U OD1 A:Asp459 4.20 U CG A:Asp459 4.56 U NH1 A:Arg462 4.94 U U A:Ium1002 4.16 U O A:Hoh1156 4.98 interactive model: Uranium binding site 4 out of 8 in 1b1h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Uranium in the PDB 1b1h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Val230, A: Glu251, A: Asp369, A: Lys373, conact list: Atom Atom Distance (A) U CG2 A:Val230 4.64 U OE1 A:Glu251 4.34 U OE2 A:Glu251 2.41 U CD A:Glu251 3.49 U CG A:Glu251 4.23 U CB A:Asp369 4.70 U OD2 A:Asp369 4.96 U OD1 A:Asp369 2.94 U CG A:Asp369 4.12 U NZ A:Lys373 3.92 interactive model: Uranium binding site 5 out of 8 in 1b1h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Uranium in the PDB 1b1h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys281, A: Phe361, A: Asp362, A: Asp410, A: Hoh1139, conact list: Atom Atom Distance (A) U NZ A:Lys281 4.21 U CA A:Phe361 4.89 U N A:Asp362 4.32 U CB A:Asp362 4.37 U OD2 A:Asp362 2.27 U OD1 A:Asp362 3.83 U CG A:Asp362 3.25 U CB A:Asp410 4.65 U OD2 A:Asp410 2.40 U OD1 A:Asp410 3.61 U CG A:Asp410 3.33 U O A:Hoh1139 4.46 interactive model: Uranium binding site 6 out of 8 in 1b1h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Uranium in the PDB 1b1h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His517, A: Ium1007, conact list: Atom Atom Distance (A) U O A:His517 3.07 U CD2 A:His517 4.97 U C A:His517 3.18 U CA A:His517 4.68 U OXT A:His517 2.64 U U A:Ium1007 4.06 interactive model: Uranium binding site 7 out of 8 in 1b1h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Uranium in the PDB 1b1h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ium1006, A: Hoh1276, conact list: Atom Atom Distance (A) U U A:Ium1006 4.06 U O A:Hoh1276 4.93 interactive model: Uranium binding site 8 out of 8 in 1b1h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Uranium in the PDB 1b1h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp11, conact list: Atom Atom Distance (A) U CB A:Asp11 3.89 U OD2 A:Asp11 2.52 U OD1 A:Asp11 4.62 U CG A:Asp11 3.54 interactive model: