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Uranium in PDB 1b1h: Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex

Protein crystallography data

The structure of Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex, PDB code: 1b1h was solved by T.G.Davies, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.722, 75.953, 70.424, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 22

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex (pdb code 1b1h). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex, PDB code: 1b1h:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b1h

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Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1001

b:20.1
occ:0.88
OD2 A:ASP323 2.3 20.4 1.0
CG A:ASP323 3.2 24.8 1.0
OD1 A:ASP323 3.5 22.8 1.0
CB A:ASP323 4.6 23.7 1.0
NZ A:LYS157 4.6 19.9 1.0
O A:HOH1061 4.9 23.7 1.0

Uranium binding site 2 out of 8 in 1b1h

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Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1002

b:23.9
occ:0.85
U A:IUM1003 4.2 24.2 0.8

Uranium binding site 3 out of 8 in 1b1h

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Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1003

b:24.2
occ:0.81
U A:IUM1002 4.2 23.9 0.8
OD1 A:ASP459 4.2 57.1 1.0
OD2 A:ASP459 4.5 59.6 1.0
CG A:ASP459 4.6 54.9 1.0
CB A:PRO153 4.9 26.8 1.0
NH1 A:ARG462 4.9 42.6 1.0
O A:HOH1156 5.0 30.2 1.0

Uranium binding site 4 out of 8 in 1b1h

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Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1004

b:22.4
occ:0.60
OE2 A:GLU251 2.4 34.3 1.0
OD1 A:ASP369 2.9 42.4 0.0
CD A:GLU251 3.5 38.8 1.0
NZ A:LYS373 3.9 39.9 1.0
CG A:ASP369 4.1 40.5 0.0
CG A:GLU251 4.2 35.2 1.0
OE1 A:GLU251 4.3 35.4 1.0
CG2 A:VAL230 4.6 25.0 1.0
CB A:ASP369 4.7 31.3 1.0
OD2 A:ASP369 5.0 37.9 0.0

Uranium binding site 5 out of 8 in 1b1h

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Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1005

b:23.1
occ:0.86
OD2 A:ASP362 2.3 19.1 1.0
OD2 A:ASP410 2.4 20.2 1.0
CG A:ASP362 3.2 23.7 1.0
CG A:ASP410 3.3 23.3 1.0
OD1 A:ASP410 3.6 27.5 1.0
OD1 A:ASP362 3.8 24.1 1.0
NZ A:LYS281 4.2 28.9 1.0
N A:ASP362 4.3 21.4 1.0
CB A:ASP362 4.4 21.7 1.0
O A:HOH1139 4.5 29.5 1.0
CB A:ASP410 4.7 20.2 1.0
CA A:PHE361 4.9 21.7 1.0

Uranium binding site 6 out of 8 in 1b1h

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Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1006

b:12.4
occ:0.31
OXT A:HIS517 2.6 27.9 1.0
O A:HIS517 3.1 29.9 1.0
C A:HIS517 3.2 24.3 1.0
U A:IUM1007 4.1 9.4 0.2
CA A:HIS517 4.7 26.4 1.0
CD2 A:HIS517 5.0 28.9 1.0

Uranium binding site 7 out of 8 in 1b1h

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Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1007

b:9.4
occ:0.23
U A:IUM1006 4.1 12.4 0.3
O A:HOH1276 4.9 38.2 1.0

Uranium binding site 8 out of 8 in 1b1h

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Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein/Tripeptide (Lys Hpe Lys) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1008

b:21.7
occ:0.46
OD2 A:ASP11 2.5 35.3 1.0
CG A:ASP11 3.5 32.3 1.0
CB A:ASP11 3.9 29.3 1.0
OD1 A:ASP11 4.6 30.6 1.0

Reference:

T.G.Davies, R.E.Hubbard, J.R.Tame. Relating Structure to Thermodynamics: the Crystal Structures and Binding Affinity of Eight Oppa-Peptide Complexes. Protein Sci. V. 8 1432 1999.
ISSN: ISSN 0961-8368
PubMed: 10422831
Page generated: Wed Dec 16 02:29:18 2020

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