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Uranium in PDB 1b2h: Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine

Protein crystallography data

The structure of Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine, PDB code: 1b2h was solved by T.G.Davies, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.659, 76.124, 70.240, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 22

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine (pdb code 1b2h). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine, PDB code: 1b2h:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b2h

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Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:20.7
occ:0.86
OD2 A:ASP323 2.3 20.1 1.0
O A:HOH536 2.3 21.2 1.0
O A:HOH626 2.5 28.1 1.0
CG A:ASP323 3.3 22.4 1.0
OD1 A:ASP323 3.5 22.4 1.0
O A:HOH727 4.2 35.5 1.0
CB A:ASP323 4.7 23.3 1.0
NZ A:LYS157 4.7 21.9 1.0

Uranium binding site 2 out of 8 in 1b2h

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Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:24.3
occ:0.84
U A:U1521 4.2 25.1 0.8
O A:HOH596 4.8 25.9 1.0

Uranium binding site 3 out of 8 in 1b2h

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Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:25.1
occ:0.85
O A:HOH604 2.5 26.7 1.0
O A:HOH596 2.6 25.9 1.0
U A:U1520 4.2 24.3 0.8
OD1 A:ASP459 4.2 51.2 1.0
OD2 A:ASP459 4.7 52.4 1.0
CG A:ASP459 4.7 51.1 1.0
CB A:PRO153 4.9 26.2 1.0
NH1 A:ARG462 4.9 43.1 1.0
O A:HOH599 5.0 26.0 1.0

Uranium binding site 4 out of 8 in 1b2h

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Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:23.2
occ:0.71
OE1 A:GLU251 2.4 29.2 1.0
OD2 A:ASP369 2.4 35.4 1.0
O A:HOH582 2.5 24.9 1.0
O A:HOH595 2.6 25.8 1.0
O A:HOH721 2.7 35.0 1.0
CD A:GLU251 3.5 31.7 1.0
CG A:ASP369 3.6 37.7 1.0
NZ A:LYS373 3.8 32.0 1.0
OD1 A:ASP369 4.3 40.5 1.0
CG A:GLU251 4.3 30.2 1.0
OE2 A:GLU251 4.4 30.4 1.0
O A:HOH861 4.4 47.6 1.0
CG2 A:VAL230 4.7 23.7 1.0
CB A:ASP369 4.7 32.3 1.0

Uranium binding site 5 out of 8 in 1b2h

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Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:26.4
occ:0.82
OD1 A:ASP362 2.4 22.4 1.0
O A:HOH606 2.4 27.0 1.0
OD1 A:ASP410 2.4 24.5 1.0
CG A:ASP362 3.2 23.0 1.0
CG A:ASP410 3.3 25.6 1.0
OD2 A:ASP410 3.5 29.4 1.0
OD2 A:ASP362 3.8 23.5 1.0
NZ A:LYS281 4.2 36.6 1.0
N A:ASP362 4.2 23.8 1.0
CB A:ASP362 4.3 23.8 1.0
O A:HOH630 4.6 28.9 1.0
CB A:ASP410 4.7 23.9 1.0
CA A:PHE361 4.8 26.8 1.0
C A:PHE361 4.9 26.6 1.0
CA A:ASP362 5.0 23.1 1.0

Uranium binding site 6 out of 8 in 1b2h

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Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:33.8
occ:0.40
OXT A:HIS517 2.8 32.2 1.0
C A:HIS517 3.5 32.4 1.0
O A:HIS517 3.6 33.2 1.0
U A:U1525 4.1 31.1 0.3
O A:HOH723 4.7 35.6 1.0

Uranium binding site 7 out of 8 in 1b2h

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Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:31.1
occ:0.31
U A:U1524 4.1 33.8 0.4
O A:HOH706 4.6 34.1 1.0
O A:HOH847 4.8 45.5 1.0

Uranium binding site 8 out of 8 in 1b2h

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Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U526

b:36.6
occ:0.39
OD2 A:ASP11 2.7 38.8 1.0
CG A:ASP11 3.7 36.7 1.0
CB A:ASP11 3.9 34.0 1.0
OD1 A:ASP11 4.9 35.7 1.0

Reference:

T.G.Davies, R.E.Hubbard, J.R.Tame. Relating Structure to Thermodynamics: the Crystal Structures and Binding Affinity of Eight Oppa-Peptide Complexes. Protein Sci. V. 8 1432 1999.
ISSN: ISSN 0961-8368
PubMed: 10422831
Page generated: Wed Dec 16 02:29:17 2020

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