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Uranium in PDB 1b32: Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk, PDB code: 1b32 was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.720, 75.720, 70.310, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.4

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk (pdb code 1b32). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk, PDB code: 1b32:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b32

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Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:11.1
occ:0.88
OD2 A:ASP323 2.3 11.3 1.0
CG A:ASP323 3.2 10.9 1.0
OD1 A:ASP323 3.5 11.9 1.0
CB A:ASP323 4.6 11.8 1.0
NZ A:LYS157 4.8 11.6 1.0
O A:HOH728 4.9 24.2 1.0

Uranium binding site 2 out of 8 in 1b32

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Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:15.1
occ:0.85
O A:ACT528 2.4 11.4 1.0
O A:HOH578 2.5 13.3 1.0
C A:ACT528 3.2 15.9 1.0
CH3 A:ACT528 3.3 16.8 1.0
O A:HOH698 3.4 23.1 1.0
U A:IUM520 4.2 16.4 0.8
OXT A:ACT528 4.4 13.9 1.0
O A:ACT530 4.6 16.9 1.0
O A:HOH606 4.7 15.7 1.0

Uranium binding site 3 out of 8 in 1b32

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Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:16.4
occ:0.81
O A:ACT530 2.4 16.9 1.0
OXT A:ACT529 2.4 19.5 1.0
O A:HOH606 2.4 15.7 1.0
C A:ACT530 3.3 22.2 1.0
C A:ACT529 3.5 23.6 1.0
CH3 A:ACT530 3.5 22.1 1.0
CH3 A:ACT529 3.9 25.0 1.0
OD2 A:ASP459 4.1 36.9 1.0
U A:IUM519 4.2 15.1 0.8
OD1 A:ASP459 4.2 37.2 1.0
CG A:ASP459 4.4 36.1 1.0
OXT A:ACT530 4.5 21.4 1.0
O A:ACT528 4.6 11.4 1.0
O A:ACT529 4.6 22.9 1.0
O A:HOH578 4.6 13.3 1.0
CB A:PRO153 4.9 15.7 1.0

Uranium binding site 4 out of 8 in 1b32

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Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:15.4
occ:0.60
OE2 A:GLU251 2.3 26.3 1.0
O A:HOH675 2.6 20.8 1.0
OD1 A:ASP369 3.0 28.4 1.0
CD A:GLU251 3.5 27.1 1.0
NZ A:LYS373 3.9 25.6 1.0
CG A:ASP369 4.2 27.6 1.0
CG A:GLU251 4.3 26.4 1.0
OE1 A:GLU251 4.3 27.7 1.0
CG2 A:VAL230 4.7 18.5 1.0
CE A:LYS373 4.8 25.1 1.0
CB A:ASP369 4.9 23.7 1.0
OD2 A:ASP369 5.0 28.7 1.0

Uranium binding site 5 out of 8 in 1b32

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Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:16.0
occ:0.86
OD2 A:ASP362 2.3 8.6 1.0
OD2 A:ASP410 2.4 9.6 1.0
O A:HOH605 2.4 15.4 1.0
CG A:ASP362 3.2 12.1 1.0
CG A:ASP410 3.4 13.8 1.0
OD1 A:ASP410 3.7 14.6 1.0
OD1 A:ASP362 3.8 13.1 1.0
NZ A:LYS281 4.1 30.1 1.0
O A:HOH789 4.1 27.3 1.0
N A:ASP362 4.3 14.8 1.0
CB A:ASP362 4.3 12.1 1.0
O A:HOH808 4.4 27.5 1.0
O A:HOH608 4.6 16.4 1.0
CB A:ASP410 4.7 13.4 1.0
CA A:PHE361 4.8 16.0 1.0
CA A:ASP362 5.0 13.3 1.0
C A:PHE361 5.0 15.0 1.0

Uranium binding site 6 out of 8 in 1b32

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Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:22.8
occ:0.31
OXT A:HIS517 2.7 21.6 1.0
C A:HIS517 3.6 20.7 1.0
O A:HIS517 3.6 23.4 1.0
U A:IUM524 4.1 20.8 0.2
O A:HOH753 4.6 26.1 1.0

Uranium binding site 7 out of 8 in 1b32

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Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:20.8
occ:0.23
U A:IUM523 4.1 22.8 0.3
O A:HOH758 4.7 25.8 1.0

Uranium binding site 8 out of 8 in 1b32

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Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kmk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:33.9
occ:0.46
OD2 A:ASP11 2.6 30.6 1.0
CG A:ASP11 3.5 27.6 1.0
CB A:ASP11 3.9 24.3 1.0
OD1 A:ASP11 4.4 26.0 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein. J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Wed Dec 16 02:29:18 2020

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