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Uranium in PDB 1b3g: Oligo-Peptide Binding Protein (Oppa) Complexed with Kik

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Kik, PDB code: 1b3g was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.690, 76.110, 70.250, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 23.8

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kik (pdb code 1b3g). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kik, PDB code: 1b3g:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b3g

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Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kik


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kik within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:21.8
occ:1.00
OD2 A:ASP323 2.3 10.8 1.0
CG A:ASP323 3.2 17.7 1.0
OD1 A:ASP323 3.5 17.0 1.0
CB A:ASP323 4.6 17.3 1.0
NZ A:LYS157 4.7 18.3 1.0

Uranium binding site 2 out of 8 in 1b3g

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Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kik


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kik within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:27.1
occ:1.00
O A:HOH636 3.8 26.8 1.0
U A:IUM520 4.2 27.7 1.0

Uranium binding site 3 out of 8 in 1b3g

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Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kik


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kik within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:27.7
occ:1.00
O A:HOH541 2.7 18.5 1.0
O A:HOH536 2.8 17.5 1.0
OD2 A:ASP459 4.0 46.7 1.0
U A:IUM519 4.2 27.1 1.0
CG A:ASP459 4.5 45.3 1.0
OD1 A:ASP459 4.6 46.9 1.0
CB A:PRO153 4.9 22.5 1.0
NH1 A:ARG462 4.9 38.2 1.0

Uranium binding site 4 out of 8 in 1b3g

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Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kik


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kik within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:33.5
occ:1.00
OE2 A:GLU251 2.3 37.0 1.0
OD1 A:ASP369 2.8 32.4 1.0
CD A:GLU251 3.4 37.7 1.0
NZ A:LYS373 3.9 36.8 0.0
CG A:ASP369 4.0 34.8 1.0
OE1 A:GLU251 4.2 37.9 1.0
CG A:GLU251 4.3 35.4 1.0
CG2 A:VAL230 4.7 22.6 1.0
OD2 A:ASP369 4.8 36.1 1.0
CB A:ASP369 4.9 30.9 1.0

Uranium binding site 5 out of 8 in 1b3g

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Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kik


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kik within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:27.9
occ:1.00
OD2 A:ASP362 2.3 23.1 1.0
OD2 A:ASP410 2.4 32.8 1.0
O A:HOH572 2.5 20.9 1.0
CG A:ASP362 3.2 24.8 1.0
CG A:ASP410 3.4 25.9 1.0
OD1 A:ASP410 3.5 26.9 1.0
OD1 A:ASP362 3.8 25.5 1.0
N A:ASP362 4.3 22.6 1.0
CB A:ASP362 4.4 23.4 1.0
NZ A:LYS281 4.6 36.8 1.0
O A:HOH628 4.6 26.5 1.0
O A:HOH852 4.6 49.9 1.0
CB A:ASP410 4.8 23.6 1.0
CA A:PHE361 4.8 26.7 1.0
C A:PHE361 4.9 26.7 1.0

Uranium binding site 6 out of 8 in 1b3g

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Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kik


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kik within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:28.2
occ:0.38
OXT A:HIS517 2.9 30.7 1.0
C A:HIS517 3.6 31.3 1.0
O A:HIS517 3.6 32.1 1.0
U A:IUM524 4.0 16.2 0.2
O A:HOH689 4.7 31.2 1.0

Uranium binding site 7 out of 8 in 1b3g

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Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kik


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kik within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:16.2
occ:0.20
U A:IUM523 4.0 28.2 0.4
O A:HOH709 4.7 32.1 1.0

Uranium binding site 8 out of 8 in 1b3g

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Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kik


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kik within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:40.3
occ:0.57
OD2 A:ASP11 2.8 33.8 1.0
CG A:ASP11 3.7 33.0 1.0
CB A:ASP11 3.9 31.2 1.0
OD1 A:ASP11 4.8 34.8 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein. J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Thu Oct 29 07:03:19 2020

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