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Uranium in PDB 1b40: Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk, PDB code: 1b40 was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.694, 75.157, 69.712, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 25.8

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk (pdb code 1b40). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk, PDB code: 1b40:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b40

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Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:36.5
occ:0.98
OD2 A:ASP323 2.6 30.2 1.0
O A:HOH531 3.3 25.6 1.0
CG A:ASP323 3.4 31.7 1.0
O A:HOH542 3.5 28.2 1.0
OD1 A:ASP323 3.6 32.5 1.0
O A:HOH617 4.6 39.6 1.0
CB A:ASP323 4.8 30.2 1.0
O A:HOH600 4.9 37.2 1.0
NZ A:LYS157 5.0 25.9 1.0

Uranium binding site 2 out of 8 in 1b40

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Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:44.0
occ:1.00
O A:HOH530 3.0 25.1 1.0
O A:HOH600 3.3 37.2 1.0
U A:IUM520 4.1 47.0 1.0

Uranium binding site 3 out of 8 in 1b40

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Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:47.0
occ:1.00
O A:HOH557 3.3 31.0 1.0
O A:HOH609 3.3 38.4 1.0
U A:IUM519 4.1 44.0 1.0
OD1 A:ASP459 4.3 61.6 1.0
OD2 A:ASP459 4.6 62.3 1.0
CG A:ASP459 4.7 60.5 1.0
CB A:PRO153 5.0 36.0 1.0

Uranium binding site 4 out of 8 in 1b40

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Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:41.8
occ:0.79
OE2 A:GLU251 2.5 47.5 1.0
OD1 A:ASP369 2.8 50.2 1.0
O A:HOH654 3.2 45.6 1.0
CD A:GLU251 3.6 48.1 1.0
CG A:ASP369 3.9 49.9 1.0
CG A:GLU251 4.2 47.2 1.0
OE1 A:GLU251 4.4 50.9 1.0
CG2 A:VAL230 4.6 34.2 1.0
CB A:ASP369 4.7 46.0 1.0
OD2 A:ASP369 4.8 52.1 1.0

Uranium binding site 5 out of 8 in 1b40

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Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:40.2
occ:1.00
OD1 A:ASP362 2.6 55.7 1.0
O A:HOH559 2.7 31.2 1.0
OD2 A:ASP410 2.7 31.6 1.0
CG A:ASP362 3.4 50.2 1.0
OD1 A:ASP410 3.4 32.5 1.0
CG A:ASP410 3.4 31.7 1.0
OD2 A:ASP362 3.9 53.8 1.0
NZ A:LYS281 4.1 48.0 1.0
CB A:ASP362 4.1 46.0 1.0
N A:ASP362 4.3 39.4 1.0
CB A:ASP410 4.8 32.5 1.0
CA A:PHE361 4.9 40.8 1.0
CA A:ASP362 4.9 40.3 1.0
C A:PHE361 5.0 40.9 1.0

Uranium binding site 6 out of 8 in 1b40

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Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:58.6
occ:0.83
O A:HIS517 2.8 51.9 1.0
C A:HIS517 3.2 49.4 1.0
U A:IUM524 3.8 50.8 0.6
CA A:HIS517 4.7 49.2 1.0

Uranium binding site 7 out of 8 in 1b40

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Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:50.8
occ:0.55
U A:IUM523 3.8 58.6 0.8

Uranium binding site 8 out of 8 in 1b40

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Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kfk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:55.4
occ:0.80
OD2 A:ASP11 2.6 45.3 1.0
O A:HOH679 3.0 56.5 1.0
O A:HOH622 3.1 40.4 1.0
CG A:ASP11 3.3 44.6 1.0
CB A:ASP11 3.7 44.2 1.0
OD1 A:ASP11 4.2 47.3 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein. J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Wed Dec 16 02:29:24 2020

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