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Uranium in PDB 1b4h: Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine

Protein crystallography data

The structure of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine, PDB code: 1b4h was solved by T.G.Davies, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.722, 75.953, 70.424, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine (pdb code 1b4h). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine, PDB code: 1b4h:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b4h

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Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U901

b:13.4
occ:0.88
OD2 A:ASP323 2.3 7.0 1.0
CG A:ASP323 3.2 10.7 1.0
OD1 A:ASP323 3.5 11.0 1.0
CB A:ASP323 4.6 11.4 1.0
NZ A:LYS157 4.8 9.9 1.0
O A:HOH1034 4.8 22.1 1.0

Uranium binding site 2 out of 8 in 1b4h

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Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U902

b:18.3
occ:0.85
U A:U1903 4.1 20.1 0.8

Uranium binding site 3 out of 8 in 1b4h

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Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U903

b:20.1
occ:0.81
OD2 A:ASP459 4.0 40.0 1.0
U A:U1902 4.1 18.3 0.8
OD1 A:ASP459 4.2 41.2 1.0
CG A:ASP459 4.4 39.6 1.0
CB A:PRO153 5.0 17.0 1.0

Uranium binding site 4 out of 8 in 1b4h

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Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U904

b:17.4
occ:0.60
OE1 A:GLU251 2.5 28.6 1.0
OD2 A:ASP369 3.0 30.9 1.0
CD A:GLU251 3.7 30.9 1.0
NZ A:LYS373 4.1 30.0 1.0
CG A:ASP369 4.1 29.1 1.0
OE2 A:GLU251 4.4 30.8 1.0
CG A:GLU251 4.5 29.8 1.0
CG2 A:VAL230 4.7 17.3 1.0
CE A:LYS373 4.8 27.7 1.0
OD1 A:ASP369 5.0 29.8 1.0
CB A:ASP369 5.0 25.2 1.0

Uranium binding site 5 out of 8 in 1b4h

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Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U905

b:18.2
occ:0.86
OD1 A:ASP362 2.3 12.5 1.0
OD1 A:ASP410 2.5 10.2 1.0
CG A:ASP362 3.2 14.5 1.0
CG A:ASP410 3.3 14.8 1.0
OD2 A:ASP410 3.5 16.5 1.0
OD2 A:ASP362 3.8 12.5 1.0
NZ A:LYS281 4.0 32.6 1.0
N A:ASP362 4.2 14.2 1.0
CB A:ASP362 4.3 13.2 1.0
O A:HOH986 4.6 17.6 1.0
CB A:ASP410 4.7 14.0 1.0
CA A:PHE361 4.8 18.6 1.0
C A:PHE361 4.9 16.2 1.0
CA A:ASP362 5.0 14.9 1.0

Uranium binding site 6 out of 8 in 1b4h

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Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U906

b:16.2
occ:0.31
OXT A:HIS517 2.7 22.8 1.0
C A:HIS517 3.5 22.6 1.0
O A:HIS517 3.5 23.5 1.0
U A:U1907 4.1 12.9 0.2
O A:HOH1157 4.8 30.9 1.0
CA A:HIS517 4.9 21.6 1.0

Uranium binding site 7 out of 8 in 1b4h

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Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U907

b:12.9
occ:0.23
U A:U1906 4.1 16.2 0.3
O A:HOH1146 4.5 30.1 1.0

Uranium binding site 8 out of 8 in 1b4h

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Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U908

b:26.5
occ:0.46
OD2 A:ASP11 2.3 27.4 1.0
CG A:ASP11 3.3 27.8 1.0
CB A:ASP11 3.8 24.1 1.0
OD1 A:ASP11 4.4 26.4 1.0

Reference:

T.G.Davies, R.E.Hubbard, J.R.Tame. Relating Structure to Thermodynamics: the Crystal Structures and Binding Affinity of Eight Oppa-Peptide Complexes. Protein Sci. V. 8 1432 1999.
ISSN: ISSN 0961-8368
PubMed: 10422831
Page generated: Wed Dec 16 02:29:24 2020

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