Uranium in the structure of Oligo-Peptide Binding Protein Complexed With Lysyl- Diaminobutyric Acid-Lysine (pdb 1b4h)

The binding sites of Uranium atom in the structure of Oligo-Peptide Binding Protein Complexed With Lysyl- Diaminobutyric Acid-Lysine (pdb code 1b4h). This binding sites where shown with 5.0 Angstroms radius around Uranium atom. The 1b4h structure was solved by T.G.DAVIES, J.R.H.TAME, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-1.9 Space group P212121 a (A) 109.722 b (A) 75.953 c (A) 70.424 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19 Rfree (%) 23 Uranium Binding Sites: Uranium binding site 1 out of 8 in 1b4h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Uranium in the PDB 1b4h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys157, A: Asp323, A: Hoh1034, conact list: Atom Atom Distance (A) U NZ A:Lys157 4.79 U CB A:Asp323 4.57 U OD2 A:Asp323 2.30 U OD1 A:Asp323 3.47 U CG A:Asp323 3.17 U O A:Hoh1034 4.83 interactive model: Uranium binding site 2 out of 8 in 1b4h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Uranium in the PDB 1b4h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1903, conact list: Atom Atom Distance (A) U U A:U1903 4.15 interactive model: Uranium binding site 3 out of 8 in 1b4h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Uranium in the PDB 1b4h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Pro153, A: Asp459, A: U1902, conact list: Atom Atom Distance (A) U CB A:Pro153 4.99 U OD2 A:Asp459 4.01 U OD1 A:Asp459 4.23 U CG A:Asp459 4.38 U U A:U1902 4.15 interactive model: Uranium binding site 4 out of 8 in 1b4h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Uranium in the PDB 1b4h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Val230, A: Glu251, A: Asp369, A: Lys373, conact list: Atom Atom Distance (A) U CG2 A:Val230 4.70 U OE1 A:Glu251 2.47 U OE2 A:Glu251 4.44 U CD A:Glu251 3.65 U CG A:Glu251 4.48 U CB A:Asp369 4.99 U OD2 A:Asp369 2.97 U OD1 A:Asp369 4.95 U CG A:Asp369 4.13 U CE A:Lys373 4.77 U NZ A:Lys373 4.09 interactive model: Uranium binding site 5 out of 8 in 1b4h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Uranium in the PDB 1b4h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys281, A: Phe361, A: Asp362, A: Asp410, A: Hoh986, conact list: Atom Atom Distance (A) U NZ A:Lys281 4.00 U C A:Phe361 4.92 U CA A:Phe361 4.80 U N A:Asp362 4.22 U CB A:Asp362 4.32 U OD2 A:Asp362 3.77 U OD1 A:Asp362 2.27 U CG A:Asp362 3.20 U CA A:Asp362 4.95 U CB A:Asp410 4.68 U OD2 A:Asp410 3.52 U OD1 A:Asp410 2.49 U CG A:Asp410 3.32 U O A:Hoh986 4.65 interactive model: Uranium binding site 6 out of 8 in 1b4h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Uranium in the PDB 1b4h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His517, A: U1907, A: Hoh1157, conact list: Atom Atom Distance (A) U O A:His517 3.53 U C A:His517 3.45 U CA A:His517 4.92 U OXT A:His517 2.72 U U A:U1907 4.14 U O A:Hoh1157 4.77 interactive model: Uranium binding site 7 out of 8 in 1b4h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Uranium in the PDB 1b4h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1906, A: Hoh1146, conact list: Atom Atom Distance (A) U U A:U1906 4.14 U O A:Hoh1146 4.54 interactive model: Uranium binding site 8 out of 8 in 1b4h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Uranium in the PDB 1b4h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp11, conact list: Atom Atom Distance (A) U CB A:Asp11 3.80 U OD2 A:Asp11 2.35 U OD1 A:Asp11 4.37 U CG A:Asp11 3.32 interactive model: