Uranium in PDB 1b4h: Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine

The structure of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine, PDB code: 1b4h was solved by T.G.Davies, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	109.722, 75.953, 70.424, 90.00, 90.00, 90.00
R / Rfree (%)	19 / 23

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine (pdb code 1b4h). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine, PDB code: 1b4h:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range: probe atom residue distance (Å) B Occ A:U901 b:13.4 occ:0.88 OD2 A:ASP323 2.3 7.0 1.0 CG A:ASP323 3.2 10.7 1.0 OD1 A:ASP323 3.5 11.0 1.0 CB A:ASP323 4.6 11.4 1.0 NZ A:LYS157 4.8 9.9 1.0 O A:HOH1034 4.8 22.1 1.0

Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range: probe atom residue distance (Å) B Occ A:U902 b:18.3 occ:0.85 U A:U1903 4.1 20.1 0.8

Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range: probe atom residue distance (Å) B Occ A:U903 b:20.1 occ:0.81 OD2 A:ASP459 4.0 40.0 1.0 U A:U1902 4.1 18.3 0.8 OD1 A:ASP459 4.2 41.2 1.0 CG A:ASP459 4.4 39.6 1.0 CB A:PRO153 5.0 17.0 1.0

Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range: probe atom residue distance (Å) B Occ A:U904 b:17.4 occ:0.60 OE1 A:GLU251 2.5 28.6 1.0 OD2 A:ASP369 3.0 30.9 1.0 CD A:GLU251 3.7 30.9 1.0 NZ A:LYS373 4.1 30.0 1.0 CG A:ASP369 4.1 29.1 1.0 OE2 A:GLU251 4.4 30.8 1.0 CG A:GLU251 4.5 29.8 1.0 CG2 A:VAL230 4.7 17.3 1.0 CE A:LYS373 4.8 27.7 1.0 OD1 A:ASP369 5.0 29.8 1.0 CB A:ASP369 5.0 25.2 1.0

Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range: probe atom residue distance (Å) B Occ A:U905 b:18.2 occ:0.86 OD1 A:ASP362 2.3 12.5 1.0 OD1 A:ASP410 2.5 10.2 1.0 CG A:ASP362 3.2 14.5 1.0 CG A:ASP410 3.3 14.8 1.0 OD2 A:ASP410 3.5 16.5 1.0 OD2 A:ASP362 3.8 12.5 1.0 NZ A:LYS281 4.0 32.6 1.0 N A:ASP362 4.2 14.2 1.0 CB A:ASP362 4.3 13.2 1.0 O A:HOH986 4.6 17.6 1.0 CB A:ASP410 4.7 14.0 1.0 CA A:PHE361 4.8 18.6 1.0 C A:PHE361 4.9 16.2 1.0 CA A:ASP362 5.0 14.9 1.0

Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range: probe atom residue distance (Å) B Occ A:U906 b:16.2 occ:0.31 OXT A:HIS517 2.7 22.8 1.0 C A:HIS517 3.5 22.6 1.0 O A:HIS517 3.5 23.5 1.0 U A:U1907 4.1 12.9 0.2 O A:HOH1157 4.8 30.9 1.0 CA A:HIS517 4.9 21.6 1.0

Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range: probe atom residue distance (Å) B Occ A:U907 b:12.9 occ:0.23 U A:U1906 4.1 16.2 0.3 O A:HOH1146 4.5 30.1 1.0

Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein Complexed with Lysyl- Diaminobutyric Acid-Lysine within 5.0Å range: probe atom residue distance (Å) B Occ A:U908 b:26.5 occ:0.46 OD2 A:ASP11 2.3 27.4 1.0 CG A:ASP11 3.3 27.8 1.0 CB A:ASP11 3.8 24.1 1.0 OD1 A:ASP11 4.4 26.4 1.0

T.G.Davies, R.E.Hubbard, J.R.Tame. Relating Structure to Thermodynamics: the Crystal Structures and Binding Affinity of Eight Oppa-Peptide Complexes. Protein Sci. V. 8 1432 1999.
ISSN: ISSN 0961-8368
PubMed: 10422831