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Uranium in PDB 1b51: Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk, PDB code: 1b51 was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.164, 76.063, 70.406, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 22.3

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk (pdb code 1b51). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 9 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk, PDB code: 1b51:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Uranium binding site 1 out of 9 in 1b51

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Uranium binding site 1 out of 9 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:13.9
occ:1.00
OD2 A:ASP323 2.3 9.8 1.0
O A:HOH570 2.5 11.8 1.0
O A:HOH693 2.8 28.8 1.0
CG A:ASP323 3.2 12.9 1.0
OD1 A:ASP323 3.5 10.1 1.0
O A:HOH901 4.4 39.0 1.0
CB A:ASP323 4.6 11.3 1.0
O A:HOH906 4.7 39.7 1.0
NZ A:LYS157 4.8 11.6 1.0
O A:HOH669 5.0 21.5 1.0

Uranium binding site 2 out of 9 in 1b51

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Uranium binding site 2 out of 9 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:18.2
occ:1.00
O A:HOH568 2.6 10.6 1.0
O A:HOH605 2.6 13.7 1.0
O A:HOH684 3.8 22.5 1.0
O A:HOH727 4.2 25.0 1.0
U A:IUM520 4.2 19.8 1.0
O A:HOH558 4.4 11.3 1.0
O A:HOH577 4.6 12.1 1.0
O A:HOH654 4.7 16.7 1.0

Uranium binding site 3 out of 9 in 1b51

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Uranium binding site 3 out of 9 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:19.8
occ:1.00
O A:HOH577 2.4 12.1 1.0
O A:HOH654 2.5 16.7 1.0
O A:HOH566 2.6 16.6 1.0
OD2 A:ASP459 4.0 50.6 1.0
U A:IUM519 4.2 18.2 1.0
O A:HOH647 4.4 20.1 1.0
CG A:ASP459 4.5 46.0 1.0
OD1 A:ASP459 4.5 49.4 1.0
O A:HOH568 4.7 10.6 1.0
O A:HOH727 4.8 25.0 1.0
CB A:PRO153 4.9 13.1 1.0

Uranium binding site 4 out of 9 in 1b51

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Uranium binding site 4 out of 9 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:18.8
occ:0.78
OE2 A:GLU251 2.4 27.3 1.0
OD1 A:ASP369 2.5 37.1 1.0
O A:HOH686 3.0 23.6 1.0
CD A:GLU251 3.5 29.2 1.0
CG A:ASP369 3.7 37.4 1.0
NZ A:LYS373 3.8 31.4 1.0
O A:HOH766 4.1 29.7 1.0
CG A:GLU251 4.3 25.5 1.0
OE1 A:GLU251 4.3 27.3 1.0
OD2 A:ASP369 4.4 40.9 1.0
CG2 A:VAL230 4.7 14.5 1.0
O A:HOH935 4.7 45.5 1.0
CB A:ASP369 4.8 30.2 1.0

Uranium binding site 5 out of 9 in 1b51

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Uranium binding site 5 out of 9 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:19.8
occ:1.00
OD2 A:ASP362 2.4 7.0 1.0
O A:HOH530 2.4 9.2 1.0
OD2 A:ASP410 2.4 11.1 1.0
CG A:ASP362 3.2 12.2 1.0
CG A:ASP410 3.4 12.6 1.0
OD1 A:ASP410 3.7 19.5 1.0
OD1 A:ASP362 3.7 18.4 1.0
NZ A:LYS281 4.1 33.2 1.0
N A:ASP362 4.3 19.0 1.0
CB A:ASP362 4.4 11.7 1.0
O A:HOH831 4.5 36.0 1.0
O A:HOH642 4.6 18.5 1.0
CB A:ASP410 4.7 12.8 1.0
CA A:PHE361 4.8 16.4 1.0
C A:PHE361 4.9 17.5 1.0
CA A:ASP362 5.0 12.5 1.0

Uranium binding site 6 out of 9 in 1b51

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Uranium binding site 6 out of 9 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:29.9
occ:0.52
U A:IUM526 2.2 14.7 0.1
OXT A:HIS517 2.8 23.1 1.0
C A:HIS517 3.5 22.8 1.0
O A:HIS517 3.6 23.5 1.0
U A:IUM524 4.0 16.4 0.2
O A:HOH720 4.7 25.9 1.0
CA A:HIS517 5.0 24.0 1.0

Uranium binding site 7 out of 9 in 1b51

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Uranium binding site 7 out of 9 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:16.4
occ:0.24
U A:IUM523 4.0 29.9 0.5
U A:IUM526 4.2 14.7 0.1
O A:HOH865 4.6 35.2 1.0
O A:HOH922 4.9 43.6 1.0

Uranium binding site 8 out of 9 in 1b51

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Uranium binding site 8 out of 9 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:35.9
occ:0.72
O A:HOH709 2.5 23.6 1.0
OD2 A:ASP11 2.6 32.1 1.0
CG A:ASP11 3.5 31.8 1.0
CB A:ASP11 3.9 25.7 1.0
OD1 A:ASP11 4.6 27.1 1.0
O A:HOH817 4.9 31.0 1.0

Uranium binding site 9 out of 9 in 1b51

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Uranium binding site 9 out of 9 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 9 of Oligo-Peptide Binding Protein (Oppa) Complexed with Ksk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U526

b:14.7
occ:0.11
U A:IUM523 2.2 29.9 0.5
OXT A:HIS517 2.6 23.1 1.0
C A:HIS517 3.6 22.8 1.0
O A:HOH720 4.0 25.9 1.0
U A:IUM524 4.2 16.4 0.2
O A:HIS517 4.2 23.5 1.0
CA A:HIS517 4.8 24.0 1.0
N A:HIS517 4.8 21.6 1.0
O A:HOH817 4.9 31.0 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein. J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Wed Dec 16 02:29:25 2020

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