Atomistry » Uranium » PDB 1anv-2olb » 1b58
Atomistry »
  Uranium »
    PDB 1anv-2olb »
      1b58 »

Uranium in PDB 1b58: Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk, PDB code: 1b58 was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.670, 76.620, 71.650, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 22.3

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk (pdb code 1b58). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk, PDB code: 1b58:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:17.9
occ:1.00
O A:HOH530 2.3 15.9 1.0
OD2 A:ASP323 2.5 10.0 1.0
O A:HOH651 2.8 18.6 1.0
CG A:ASP323 3.3 14.2 1.0
OD1 A:ASP323 3.3 14.5 1.0
O A:HOH527 4.3 15.7 1.0
CB A:ASP323 4.7 5.7 1.0
NZ A:LYS157 4.9 18.1 1.0

Uranium binding site 2 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:25.8
occ:1.00
O A:HOH613 2.7 16.9 1.0
O A:HOH545 2.7 20.0 1.0
O A:HOH536 2.9 7.8 1.0
O A:HOH615 2.9 18.8 1.0
U A:IUM520 4.2 28.1 1.0
O A:HOH658 4.2 27.9 1.0
O A:HOH623 4.4 24.6 1.0
O A:HOH568 4.9 22.9 1.0
O A:HOH712 4.9 24.8 1.0

Uranium binding site 3 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:28.1
occ:1.00
O A:HOH712 2.7 24.8 1.0
O A:HOH645 3.1 17.3 1.0
O A:HOH605 3.2 29.6 1.0
O A:HOH693 3.4 26.5 1.0
OD1 A:ASP459 4.0 45.2 1.0
U A:IUM519 4.2 25.8 1.0
OD2 A:ASP459 4.4 50.4 1.0
CG A:ASP459 4.5 44.8 1.0
O A:HOH613 4.7 16.9 1.0
O A:HOH623 4.9 24.6 1.0
CB A:PRO153 4.9 19.4 1.0

Uranium binding site 4 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:54.0
occ:1.00
OE2 A:GLU251 2.8 52.6 1.0
O A:HOH841 3.3 56.1 1.0
OD1 A:ASP369 3.6 35.9 1.0
CD A:GLU251 4.0 60.2 1.0
CG A:ASP369 4.4 30.9 1.0
CG A:GLU251 4.5 59.3 1.0
CE A:LYS373 4.6 42.1 1.0
CB A:ASP369 4.9 22.5 1.0
OE1 A:GLU251 4.9 60.8 1.0

Uranium binding site 5 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:23.6
occ:1.00
OD2 A:ASP362 2.5 12.0 1.0
OD2 A:ASP410 2.6 15.0 1.0
O A:HOH644 2.8 23.4 1.0
CG A:ASP362 3.3 13.7 1.0
OD1 A:ASP410 3.4 7.9 1.0
CG A:ASP410 3.4 12.8 1.0
OD1 A:ASP362 3.8 15.5 1.0
NZ A:LYS281 4.1 29.6 1.0
N A:ASP362 4.2 14.8 1.0
CB A:ASP362 4.3 13.6 1.0
O A:HOH650 4.6 36.1 1.0
CA A:PHE361 4.7 21.0 1.0
CB A:ASP410 4.8 11.4 1.0
C A:PHE361 4.8 20.7 1.0
CA A:ASP362 5.0 15.9 1.0

Uranium binding site 6 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:34.7
occ:1.00
O A:HIS517 2.7 26.0 1.0
OXT A:HIS517 2.8 15.5 1.0
C A:HIS517 3.0 24.7 1.0
U A:IUM524 4.2 40.0 1.0
O A:HOH777 4.5 44.5 1.0
CA A:HIS517 4.6 24.5 1.0
O A:HOH839 4.8 26.1 1.0
CD2 A:HIS517 4.9 20.1 1.0
O A:HOH583 4.9 26.1 1.0

Uranium binding site 7 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:40.0
occ:1.00
O A:HOH661 2.9 19.5 1.0
O A:HOH696 2.9 41.9 1.0
O A:HOH839 2.9 26.1 1.0
O A:HOH731 3.0 27.6 1.0
U A:IUM523 4.2 34.7 1.0

Uranium binding site 8 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:43.6
occ:1.00
OD2 A:ASP11 2.5 27.3 1.0
O A:HOH752 3.0 48.4 1.0
O A:HOH630 3.1 28.1 1.0
O A:HOH662 3.2 38.5 1.0
CG A:ASP11 3.5 27.5 1.0
CB A:ASP11 3.6 23.9 1.0
OD1 A:ASP11 4.6 34.3 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein. J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Wed Dec 16 02:29:26 2020

Last articles

Zn in 7NA9
Zn in 7LZP
Zn in 7M1H
Zn in 7L6V
Zn in 7CM0
V in 7P8R
Ni in 7L19
Na in 7T88
Na in 7MJ5
Na in 7L00
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy