Atomistry » Uranium » PDB 1anv-2olb » 1b58
Atomistry »
  Uranium »
    PDB 1anv-2olb »
      1b58 »

Uranium in PDB 1b58: Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk, PDB code: 1b58 was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.670, 76.620, 71.650, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 22.3

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk (pdb code 1b58). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk, PDB code: 1b58:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:17.9
occ:1.00
O A:HOH530 2.3 15.9 1.0
OD2 A:ASP323 2.5 10.0 1.0
O A:HOH651 2.8 18.6 1.0
CG A:ASP323 3.3 14.2 1.0
OD1 A:ASP323 3.3 14.5 1.0
O A:HOH527 4.3 15.7 1.0
CB A:ASP323 4.7 5.7 1.0
NZ A:LYS157 4.9 18.1 1.0

Uranium binding site 2 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:25.8
occ:1.00
O A:HOH613 2.7 16.9 1.0
O A:HOH545 2.7 20.0 1.0
O A:HOH536 2.9 7.8 1.0
O A:HOH615 2.9 18.8 1.0
U A:IUM520 4.2 28.1 1.0
O A:HOH658 4.2 27.9 1.0
O A:HOH623 4.4 24.6 1.0
O A:HOH568 4.9 22.9 1.0
O A:HOH712 4.9 24.8 1.0

Uranium binding site 3 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:28.1
occ:1.00
O A:HOH712 2.7 24.8 1.0
O A:HOH645 3.1 17.3 1.0
O A:HOH605 3.2 29.6 1.0
O A:HOH693 3.4 26.5 1.0
OD1 A:ASP459 4.0 45.2 1.0
U A:IUM519 4.2 25.8 1.0
OD2 A:ASP459 4.4 50.4 1.0
CG A:ASP459 4.5 44.8 1.0
O A:HOH613 4.7 16.9 1.0
O A:HOH623 4.9 24.6 1.0
CB A:PRO153 4.9 19.4 1.0

Uranium binding site 4 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:54.0
occ:1.00
OE2 A:GLU251 2.8 52.6 1.0
O A:HOH841 3.3 56.1 1.0
OD1 A:ASP369 3.6 35.9 1.0
CD A:GLU251 4.0 60.2 1.0
CG A:ASP369 4.4 30.9 1.0
CG A:GLU251 4.5 59.3 1.0
CE A:LYS373 4.6 42.1 1.0
CB A:ASP369 4.9 22.5 1.0
OE1 A:GLU251 4.9 60.8 1.0

Uranium binding site 5 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:23.6
occ:1.00
OD2 A:ASP362 2.5 12.0 1.0
OD2 A:ASP410 2.6 15.0 1.0
O A:HOH644 2.8 23.4 1.0
CG A:ASP362 3.3 13.7 1.0
OD1 A:ASP410 3.4 7.9 1.0
CG A:ASP410 3.4 12.8 1.0
OD1 A:ASP362 3.8 15.5 1.0
NZ A:LYS281 4.1 29.6 1.0
N A:ASP362 4.2 14.8 1.0
CB A:ASP362 4.3 13.6 1.0
O A:HOH650 4.6 36.1 1.0
CA A:PHE361 4.7 21.0 1.0
CB A:ASP410 4.8 11.4 1.0
C A:PHE361 4.8 20.7 1.0
CA A:ASP362 5.0 15.9 1.0

Uranium binding site 6 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:34.7
occ:1.00
O A:HIS517 2.7 26.0 1.0
OXT A:HIS517 2.8 15.5 1.0
C A:HIS517 3.0 24.7 1.0
U A:IUM524 4.2 40.0 1.0
O A:HOH777 4.5 44.5 1.0
CA A:HIS517 4.6 24.5 1.0
O A:HOH839 4.8 26.1 1.0
CD2 A:HIS517 4.9 20.1 1.0
O A:HOH583 4.9 26.1 1.0

Uranium binding site 7 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:40.0
occ:1.00
O A:HOH661 2.9 19.5 1.0
O A:HOH696 2.9 41.9 1.0
O A:HOH839 2.9 26.1 1.0
O A:HOH731 3.0 27.6 1.0
U A:IUM523 4.2 34.7 1.0

Uranium binding site 8 out of 8 in 1b58

Go back to Uranium Binding Sites List in 1b58
Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kyk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:43.6
occ:1.00
OD2 A:ASP11 2.5 27.3 1.0
O A:HOH752 3.0 48.4 1.0
O A:HOH630 3.1 28.1 1.0
O A:HOH662 3.2 38.5 1.0
CG A:ASP11 3.5 27.5 1.0
CB A:ASP11 3.6 23.9 1.0
OD1 A:ASP11 4.6 34.3 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein. J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Wed Dec 16 02:29:26 2020

Last articles

Zn in 7O75
Zn in 7O73
Zn in 7O4I
Zn in 7O72
Zn in 7O4J
Zn in 7NVR
Zn in 7NVY
Zn in 7NVZ
Zn in 7NW0
Zn in 7O4K
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy