Atomistry » Uranium » PDB 1anv-2olb » 1b5i
Atomistry »
  Uranium »
    PDB 1anv-2olb »
      1b5i »

Uranium in PDB 1b5i: Oligo-Peptide Binding Protein (Oppa) Complexed with Knk

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk, PDB code: 1b5i was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.689, 76.089, 70.490, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22.3

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk (pdb code 1b5i). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk, PDB code: 1b5i:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:13.9
occ:1.00
OD2 A:ASP323 2.4 7.8 1.0
CG A:ASP323 3.3 13.8 1.0
OD1 A:ASP323 3.5 12.5 1.0
CB A:ASP323 4.6 9.9 1.0
NZ A:LYS157 4.8 8.2 1.0
O A:HOH633 4.9 18.9 1.0

Uranium binding site 2 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:19.0
occ:1.00
U A:U1520 4.2 20.4 1.0

Uranium binding site 3 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:20.4
occ:1.00
OD2 A:ASP459 3.9 46.3 1.0
U A:U1519 4.2 19.0 1.0
OD1 A:ASP459 4.2 42.0 1.0
CG A:ASP459 4.4 42.6 1.0
NH1 A:ARG462 4.9 32.5 1.0
CB A:PRO153 4.9 17.0 1.0

Uranium binding site 4 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:24.7
occ:1.00
OE2 A:GLU251 2.4 20.9 1.0
OD1 A:ASP369 2.6 27.6 1.0
CD A:GLU251 3.6 28.3 1.0
NZ A:LYS373 3.7 35.5 1.0
CG A:ASP369 3.8 32.8 1.0
CG A:GLU251 4.3 25.2 1.0
OE1 A:GLU251 4.4 26.2 1.0
OD2 A:ASP369 4.6 32.9 1.0
CB A:ASP369 4.8 24.3 1.0
CG2 A:VAL230 4.8 12.2 1.0

Uranium binding site 5 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:19.8
occ:1.00
OD2 A:ASP362 2.3 10.8 1.0
OD2 A:ASP410 2.4 11.1 1.0
CG A:ASP362 3.3 16.6 1.0
CG A:ASP410 3.3 15.8 1.0
OD1 A:ASP410 3.4 18.6 1.0
OD1 A:ASP362 3.9 14.4 1.0
NZ A:LYS281 4.1 28.5 1.0
N A:ASP362 4.2 12.5 1.0
CB A:ASP362 4.3 13.4 1.0
O A:HOH616 4.6 17.6 1.0
CB A:ASP410 4.7 10.8 1.0
CA A:PHE361 4.8 16.8 1.0
C A:PHE361 4.9 17.0 1.0
CA A:ASP362 5.0 13.4 1.0

Uranium binding site 6 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:41.8
occ:1.00
OXT A:HIS517 2.7 20.0 1.0
C A:HIS517 3.4 22.1 1.0
O A:HIS517 3.4 25.1 1.0
U A:U1524 4.0 47.7 1.0
O A:HOH701 4.7 23.3 1.0
CA A:HIS517 4.9 19.9 1.0

Uranium binding site 7 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:47.7
occ:1.00
U A:U1523 4.0 41.8 1.0
O A:HOH705 4.6 23.5 1.0

Uranium binding site 8 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:46.4
occ:1.00
OD2 A:ASP11 2.5 24.8 1.0
CG A:ASP11 3.5 27.0 1.0
CB A:ASP11 3.9 22.4 1.0
O A:HOH746 4.3 26.6 1.0
OD1 A:ASP11 4.6 25.0 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein. J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Thu Oct 29 07:03:26 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy