Atomistry » Uranium » PDB 1anv-2olb » 1b5i
Atomistry »
  Uranium »
    PDB 1anv-2olb »
      1b5i »

Uranium in PDB 1b5i: Oligo-Peptide Binding Protein (Oppa) Complexed with Knk

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk, PDB code: 1b5i was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.689, 76.089, 70.490, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22.3

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk (pdb code 1b5i). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk, PDB code: 1b5i:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:13.9
occ:1.00
OD2 A:ASP323 2.4 7.8 1.0
CG A:ASP323 3.3 13.8 1.0
OD1 A:ASP323 3.5 12.5 1.0
CB A:ASP323 4.6 9.9 1.0
NZ A:LYS157 4.8 8.2 1.0
O A:HOH633 4.9 18.9 1.0

Uranium binding site 2 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:19.0
occ:1.00
U A:U1520 4.2 20.4 1.0

Uranium binding site 3 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:20.4
occ:1.00
OD2 A:ASP459 3.9 46.3 1.0
U A:U1519 4.2 19.0 1.0
OD1 A:ASP459 4.2 42.0 1.0
CG A:ASP459 4.4 42.6 1.0
NH1 A:ARG462 4.9 32.5 1.0
CB A:PRO153 4.9 17.0 1.0

Uranium binding site 4 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:24.7
occ:1.00
OE2 A:GLU251 2.4 20.9 1.0
OD1 A:ASP369 2.6 27.6 1.0
CD A:GLU251 3.6 28.3 1.0
NZ A:LYS373 3.7 35.5 1.0
CG A:ASP369 3.8 32.8 1.0
CG A:GLU251 4.3 25.2 1.0
OE1 A:GLU251 4.4 26.2 1.0
OD2 A:ASP369 4.6 32.9 1.0
CB A:ASP369 4.8 24.3 1.0
CG2 A:VAL230 4.8 12.2 1.0

Uranium binding site 5 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:19.8
occ:1.00
OD2 A:ASP362 2.3 10.8 1.0
OD2 A:ASP410 2.4 11.1 1.0
CG A:ASP362 3.3 16.6 1.0
CG A:ASP410 3.3 15.8 1.0
OD1 A:ASP410 3.4 18.6 1.0
OD1 A:ASP362 3.9 14.4 1.0
NZ A:LYS281 4.1 28.5 1.0
N A:ASP362 4.2 12.5 1.0
CB A:ASP362 4.3 13.4 1.0
O A:HOH616 4.6 17.6 1.0
CB A:ASP410 4.7 10.8 1.0
CA A:PHE361 4.8 16.8 1.0
C A:PHE361 4.9 17.0 1.0
CA A:ASP362 5.0 13.4 1.0

Uranium binding site 6 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:41.8
occ:1.00
OXT A:HIS517 2.7 20.0 1.0
C A:HIS517 3.4 22.1 1.0
O A:HIS517 3.4 25.1 1.0
U A:U1524 4.0 47.7 1.0
O A:HOH701 4.7 23.3 1.0
CA A:HIS517 4.9 19.9 1.0

Uranium binding site 7 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:47.7
occ:1.00
U A:U1523 4.0 41.8 1.0
O A:HOH705 4.6 23.5 1.0

Uranium binding site 8 out of 8 in 1b5i

Go back to Uranium Binding Sites List in 1b5i
Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Knk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Knk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:46.4
occ:1.00
OD2 A:ASP11 2.5 24.8 1.0
CG A:ASP11 3.5 27.0 1.0
CB A:ASP11 3.9 22.4 1.0
O A:HOH746 4.3 26.6 1.0
OD1 A:ASP11 4.6 25.0 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein. J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Wed Dec 16 02:29:25 2020

Last articles

Zn in 7NA9
Zn in 7LZP
Zn in 7M1H
Zn in 7L6V
Zn in 7CM0
V in 7P8R
Ni in 7L19
Na in 7T88
Na in 7MJ5
Na in 7L00
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy