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Uranium in PDB 1b5j: Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk, PDB code: 1b5j was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.926, 75.446, 70.061, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 22.7

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk (pdb code 1b5j). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk, PDB code: 1b5j:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b5j

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Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U901

b:18.9
occ:0.89
OD2 A:ASP323 2.3 15.3 1.0
CG A:ASP323 3.2 18.6 1.0
OD1 A:ASP323 3.5 19.3 1.0
O A:HOH1242 4.3 40.4 1.0
CB A:ASP323 4.6 18.9 1.0
NZ A:LYS157 4.7 15.0 1.0
O A:HOH1112 4.8 32.5 1.0
O A:HOH1045 4.9 28.4 1.0

Uranium binding site 2 out of 8 in 1b5j

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Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U902

b:24.5
occ:0.89
U A:U1903 4.2 26.1 0.8
O A:HOH1112 4.4 32.5 1.0
O A:HOH937 4.8 19.0 1.0
O A:HOH1140 4.8 34.1 1.0

Uranium binding site 3 out of 8 in 1b5j

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Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U903

b:26.1
occ:0.82
O A:HOH937 2.5 19.0 1.0
OD2 A:ASP459 3.8 48.0 1.0
U A:U1902 4.2 24.5 0.9
CG A:ASP459 4.5 46.4 1.0
O A:HOH1140 4.8 34.1 1.0
CB A:PRO153 4.9 22.2 1.0
OD1 A:ASP459 4.9 46.9 1.0
O A:HOH1110 4.9 32.3 1.0

Uranium binding site 4 out of 8 in 1b5j

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Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U904

b:25.5
occ:0.55
OE2 A:GLU251 2.6 35.8 1.0
O A:HOH1109 2.6 32.2 1.0
O A:HOH1159 3.2 35.0 1.0
OD1 A:ASP369 3.5 32.9 1.0
CD A:GLU251 3.6 38.7 1.0
CG A:ASP369 4.3 32.7 1.0
CG A:GLU251 4.3 40.1 1.0
OE1 A:GLU251 4.5 37.7 1.0
CB A:ASP369 4.8 29.6 1.0
CG2 A:VAL230 4.8 21.9 1.0

Uranium binding site 5 out of 8 in 1b5j

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Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U905

b:22.6
occ:0.88
OD2 A:ASP362 2.3 18.1 1.0
OD2 A:ASP410 2.4 13.7 1.0
O A:HOH989 2.4 23.2 1.0
CG A:ASP362 3.3 22.6 1.0
CG A:ASP410 3.4 19.2 1.0
OD1 A:ASP410 3.6 21.7 1.0
OD1 A:ASP362 3.9 22.4 1.0
NZ A:LYS281 3.9 27.4 1.0
O A:HOH1145 4.0 34.4 1.0
CB A:ASP362 4.3 19.7 1.0
N A:ASP362 4.3 20.6 1.0
O A:HOH1184 4.5 37.0 1.0
O A:HOH1324 4.6 49.4 1.0
CB A:ASP410 4.6 16.0 1.0
O A:HOH1037 4.7 27.8 1.0
CA A:PHE361 4.8 19.9 1.0
CA A:ASP362 5.0 18.7 1.0
C A:PHE361 5.0 20.4 1.0

Uranium binding site 6 out of 8 in 1b5j

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Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U906

b:45.7
occ:0.59
OXT A:HIS517 2.8 29.5 1.0
C A:HIS517 3.6 33.2 1.0
O A:HIS517 3.7 37.5 1.0
U A:U1907 3.9 48.4 0.4
O A:HOH1244 4.7 40.5 1.0

Uranium binding site 7 out of 8 in 1b5j

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Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U907

b:48.4
occ:0.42
U A:U1906 3.9 45.7 0.6
O A:HOH1128 4.7 33.4 1.0

Uranium binding site 8 out of 8 in 1b5j

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Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kqk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U908

b:41.7
occ:0.70
OD2 A:ASP11 2.6 41.8 1.0
O A:HOH1152 2.6 34.7 1.0
CG A:ASP11 3.4 35.5 1.0
CB A:ASP11 3.7 34.2 1.0
OD1 A:ASP11 4.3 34.2 1.0
O A:HOH1146 4.5 34.5 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein. J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Wed Dec 16 02:29:25 2020

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