Uranium in the structure of Oligo-Peptide Binding Protein Complexed With Lysyl-Norvalyl- Lysine (pdb 1b6h)

The binding sites of Uranium atom in the structure of Oligo-Peptide Binding Protein Complexed With Lysyl-Norvalyl- Lysine (pdb code 1b6h). This binding sites where shown with 5.0 Angstroms radius around Uranium atom. The 1b6h structure was solved by T.G.DAVIES, J.R.H.TAME, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 15.0-1.8 Space group P212121 a (A) 109.680 b (A) 75.770 c (A) 70.250 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 18 Rfree (%) 22 Uranium Binding Sites: Uranium binding site 1 out of 8 in 1b6h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Uranium in the PDB 1b6h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys157, A: Asp323, A: Hoh535, A: Hoh677, A: Hoh707, A: Hoh752, A: Hoh932, A: Hoh937, A: Hoh1010, conact list: Atom Atom Distance (A) U NZ A:Lys157 4.71 U CB A:Asp323 4.63 U OD2 A:Asp323 2.36 U OD1 A:Asp323 3.50 U CG A:Asp323 3.24 U O A:Hoh535 2.48 U O A:Hoh677 2.78 U O A:Hoh707 3.44 U O A:Hoh752 4.91 U O A:Hoh932 4.19 U O A:Hoh937 4.46 U O A:Hoh1010 4.70 interactive model: Uranium binding site 2 out of 8 in 1b6h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Uranium in the PDB 1b6h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1520, A: Hoh527, A: Hoh556, A: Hoh614, A: Hoh635, A: Hoh639, A: Hoh690, A: Hoh701, A: Hoh707, A: Hoh795, A: Hoh800, A: Hoh844, A: Hoh1001, conact list: Atom Atom Distance (A) U U A:U1520 4.18 U O A:Hoh527 1.19 U O A:Hoh556 1.65 U O A:Hoh614 2.68 U O A:Hoh635 3.93 U O A:Hoh639 2.74 U O A:Hoh690 4.20 U O A:Hoh701 4.88 U O A:Hoh707 3.93 U O A:Hoh795 3.72 U O A:Hoh800 4.17 U O A:Hoh844 4.61 U O A:Hoh1001 4.69 interactive model: Uranium binding site 3 out of 8 in 1b6h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Uranium in the PDB 1b6h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Pro153, A: Asp459, A: Arg462, A: U1519, A: Hoh527, A: Hoh556, A: Hoh614, A: Hoh661, A: Hoh690, A: Hoh701, A: Hoh800, A: Hoh806, conact list: Atom Atom Distance (A) U CB A:Pro153 4.84 U OD2 A:Asp459 4.51 U OD1 A:Asp459 4.05 U CG A:Asp459 4.56 U NH1 A:Arg462 4.94 U U A:U1519 4.18 U O A:Hoh527 4.37 U O A:Hoh556 4.91 U O A:Hoh614 4.74 U O A:Hoh661 4.89 U O A:Hoh690 4.73 U O A:Hoh701 2.52 U O A:Hoh800 4.30 U O A:Hoh806 3.47 interactive model: Uranium binding site 4 out of 8 in 1b6h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Uranium in the PDB 1b6h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Val230, A: Glu251, A: Asp369, A: Lys373, A: Hoh735, A: Hoh807, A: Hoh813, A: Hoh880, A: Hoh909, A: Hoh948, A: Hoh992, conact list: Atom Atom Distance (A) U CG2 A:Val230 4.66 U OE1 A:Glu251 2.30 U OE2 A:Glu251 4.22 U CD A:Glu251 3.45 U CG A:Glu251 4.33 U CB A:Asp369 4.36 U OD2 A:Asp369 1.91 U OD1 A:Asp369 3.42 U CG A:Asp369 3.00 U CE A:Lys373 4.95 U NZ A:Lys373 3.80 U O A:Hoh735 2.49 U O A:Hoh807 2.84 U O A:Hoh813 2.65 U O A:Hoh880 4.02 U O A:Hoh909 4.88 U O A:Hoh948 4.27 U O A:Hoh992 4.93 interactive model: Uranium binding site 5 out of 8 in 1b6h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Uranium in the PDB 1b6h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys281, A: Phe361, A: Asp362, A: Asp410, A: Hoh645, A: Hoh676, A: Hoh859, A: Hoh1017, conact list: Atom Atom Distance (A) U NZ A:Lys281 4.07 U C A:Phe361 4.93 U CA A:Phe361 4.78 U N A:Asp362 4.24 U CB A:Asp362 4.35 U OD2 A:Asp362 3.68 U OD1 A:Asp362 2.32 U CG A:Asp362 3.19 U CA A:Asp362 4.99 U CB A:Asp410 4.71 U OD2 A:Asp410 3.62 U OD1 A:Asp410 2.46 U CG A:Asp410 3.40 U O A:Hoh645 4.59 U O A:Hoh676 2.43 U O A:Hoh859 4.36 U O A:Hoh1017 4.11 interactive model: Uranium binding site 6 out of 8 in 1b6h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Uranium in the PDB 1b6h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His517, A: U1524, A: Hoh530, A: Hoh580, A: Hoh809, A: Hoh1000, conact list: Atom Atom Distance (A) U O A:His517 3.52 U C A:His517 3.47 U CA A:His517 4.94 U OXT A:His517 2.73 U U A:U1524 4.14 U O A:Hoh530 2.14 U O A:Hoh580 1.24 U O A:Hoh809 4.70 U O A:Hoh1000 4.43 interactive model: Uranium binding site 7 out of 8 in 1b6h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Uranium in the PDB 1b6h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: U1523, A: Hoh530, A: Hoh580, A: Hoh775, A: Hoh872, A: Hoh1000, A: Hoh1011, conact list: Atom Atom Distance (A) U U A:U1523 4.14 U O A:Hoh530 4.17 U O A:Hoh580 3.52 U O A:Hoh775 4.66 U O A:Hoh872 4.97 U O A:Hoh1000 4.42 U O A:Hoh1011 2.81 interactive model: Uranium binding site 8 out of 8 in 1b6h Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Uranium in the PDB 1b6h. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp11, A: Hoh895, A: Hoh1011, conact list: Atom Atom Distance (A) U CB A:Asp11 3.94 U OD2 A:Asp11 2.41 U OD1 A:Asp11 4.62 U CG A:Asp11 3.53 U O A:Hoh895 4.63 U O A:Hoh1011 4.80 interactive model: