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Uranium in PDB 1b6h: Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine

Protein crystallography data

The structure of Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine, PDB code: 1b6h was solved by T.G.Davies, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.680, 75.770, 70.250, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 22

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine (pdb code 1b6h). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine, PDB code: 1b6h:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b6h

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Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:22.0
occ:0.88
 OD2 A:ASP323 2.4 20.1 1.0
O A:HOH535 2.5 18.4 1.0
O A:HOH677 2.8 31.6 1.0
CG A:ASP323 3.2 21.7 1.0
O A:HOH707 3.4 33.0 1.0
OD1 A:ASP323 3.5 24.0 1.0
O A:HOH932 4.2 44.3 1.0
O A:HOH937 4.5 48.7 1.0
CB A:ASP323 4.6 22.4 1.0
O A:HOH1010 4.7 49.7 1.0
NZ A:LYS157 4.7 21.4 1.0
O A:HOH752 4.9 36.9 1.0

Uranium binding site 2 out of 8 in 1b6h

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Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:24.4
occ:0.85
 O A:HOH527 1.2 12.2 1.0
O A:HOH556 1.6 19.5 1.0
O A:HOH614 2.7 24.6 1.0
O A:HOH639 2.7 27.4 1.0
O A:HOH795 3.7 35.5 1.0
O A:HOH635 3.9 30.4 1.0
O A:HOH707 3.9 33.0 1.0
O A:HOH800 4.2 38.4 1.0
U A:U1520 4.2 25.5 0.8
O A:HOH690 4.2 32.0 1.0
O A:HOH844 4.6 39.9 1.0
O A:HOH1001 4.7 51.1 1.0
O A:HOH701 4.9 28.6 1.0

Uranium binding site 3 out of 8 in 1b6h

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Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:25.5
occ:0.81
 O A:HOH701 2.5 28.6 1.0
O A:HOH806 3.5 41.7 1.0
OD1 A:ASP459 4.0 51.6 1.0
U A:U1519 4.2 24.4 0.8
O A:HOH800 4.3 38.4 1.0
O A:HOH527 4.4 12.2 1.0
OD2 A:ASP459 4.5 51.0 1.0
CG A:ASP459 4.6 49.8 1.0
O A:HOH690 4.7 32.0 1.0
O A:HOH614 4.7 24.6 1.0
CB A:PRO153 4.8 27.9 1.0
O A:HOH661 4.9 30.4 1.0
O A:HOH556 4.9 19.5 1.0
NH1 A:ARG462 4.9 40.6 1.0

Uranium binding site 4 out of 8 in 1b6h

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Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:24.4
occ:0.60
 OD2 A:ASP369 1.9 37.8 1.0
OE1 A:GLU251 2.3 41.3 1.0
O A:HOH735 2.5 34.0 1.0
O A:HOH813 2.7 37.0 1.0
O A:HOH807 2.8 35.0 1.0
CG A:ASP369 3.0 37.4 1.0
OD1 A:ASP369 3.4 38.9 1.0
CD A:GLU251 3.4 39.9 1.0
NZ A:LYS373 3.8 38.7 1.0
O A:HOH880 4.0 44.0 1.0
OE2 A:GLU251 4.2 40.0 1.0
O A:HOH948 4.3 46.4 1.0
CG A:GLU251 4.3 38.9 1.0
CB A:ASP369 4.4 34.1 1.0
CG2 A:VAL230 4.7 28.8 1.0
O A:HOH909 4.9 41.7 1.0
O A:HOH992 4.9 51.2 1.0
CE A:LYS373 5.0 37.6 1.0

Uranium binding site 5 out of 8 in 1b6h

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Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:27.4
occ:0.86
 OD1 A:ASP362 2.3 19.9 1.0
O A:HOH676 2.4 22.8 1.0
OD1 A:ASP410 2.5 23.6 1.0
CG A:ASP362 3.2 23.4 1.0
CG A:ASP410 3.4 24.5 1.0
OD2 A:ASP410 3.6 26.6 1.0
OD2 A:ASP362 3.7 25.1 1.0
NZ A:LYS281 4.1 41.1 1.0
O A:HOH1017 4.1 57.8 1.0
N A:ASP362 4.2 25.4 1.0
CB A:ASP362 4.4 22.9 1.0
O A:HOH859 4.4 45.0 1.0
O A:HOH645 4.6 28.6 1.0
CB A:ASP410 4.7 23.2 1.0
CA A:PHE361 4.8 27.2 1.0
C A:PHE361 4.9 25.6 1.0
CA A:ASP362 5.0 23.2 1.0

Uranium binding site 6 out of 8 in 1b6h

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Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:29.7
occ:0.31
 O A:HOH580 1.2 22.3 1.0
O A:HOH530 2.1 16.8 1.0
OXT A:HIS517 2.7 32.3 1.0
C A:HIS517 3.5 31.8 1.0
O A:HIS517 3.5 32.1 1.0
U A:U1524 4.1 28.5 0.2
O A:HOH1000 4.4 52.1 1.0
O A:HOH809 4.7 40.9 1.0
CA A:HIS517 4.9 31.6 1.0

Uranium binding site 7 out of 8 in 1b6h

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Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:28.5
occ:0.23
 O A:HOH1011 2.8 58.4 1.0
O A:HOH580 3.5 22.3 1.0
U A:U1523 4.1 29.7 0.3
O A:HOH530 4.2 16.8 1.0
O A:HOH1000 4.4 52.1 1.0
O A:HOH775 4.7 38.8 1.0
O A:HOH872 5.0 43.0 1.0

Uranium binding site 8 out of 8 in 1b6h

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Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein Complexed with Lysyl-Norvalyl- Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:34.8
occ:0.46
 OD2 A:ASP11 2.4 41.0 1.0
CG A:ASP11 3.5 38.5 1.0
CB A:ASP11 3.9 34.9 1.0
OD1 A:ASP11 4.6 38.8 1.0
O A:HOH895 4.6 41.9 1.0
O A:HOH1011 4.8 58.4 1.0

Reference:

T.G.Davies, R.E.Hubbard, J.R.Tame. Relating Structure to Thermodynamics: the Crystal Structures and Binding Affinity of Eight Oppa-Peptide Complexes. Protein Sci. V. 8 1432 1999.
ISSN: ISSN 0961-8368
PubMed: 10422831
Page generated: Thu Oct 29 07:03:27 2020

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