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Uranium in PDB 1b7h: Oligo-Peptide Binding Protein Complexed with Lysyl- Norleucyl-Lysine

Protein crystallography data

The structure of Oligo-Peptide Binding Protein Complexed with Lysyl- Norleucyl-Lysine, PDB code: 1b7h was solved by T.G.Davies, J.R.H.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 21 21 2 A
Cell size a, b, c (Å), α, β, γ (°) 104.013, 74.078, 69.610, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 26

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein Complexed with Lysyl- Norleucyl-Lysine (pdb code 1b7h). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 2 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein Complexed with Lysyl- Norleucyl-Lysine, PDB code: 1b7h:
Jump to Uranium binding site number: 1; 2;

Uranium binding site 1 out of 2 in 1b7h

Go back to Uranium Binding Sites List in 1b7h
Uranium binding site 1 out of 2 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Norleucyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein Complexed with Lysyl- Norleucyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:36.1
occ:1.00
OD1 A:ASP362 2.2 33.8 1.0
OD1 A:ASP410 2.4 22.3 1.0
CG A:ASP410 3.2 24.4 1.0
CG A:ASP362 3.3 31.9 1.0
OD2 A:ASP410 3.3 25.2 1.0
OD2 A:ASP362 3.9 31.2 1.0
O A:HOH553 4.0 30.2 1.0
NZ A:LYS281 4.1 42.8 1.0
N A:ASP362 4.1 32.7 1.0
O A:HOH577 4.3 32.6 1.0
CB A:ASP362 4.4 30.8 1.0
CB A:ASP410 4.6 22.8 1.0
CA A:PHE361 4.8 34.5 1.0
C A:PHE361 4.9 34.2 1.0
CA A:ASP362 4.9 29.9 1.0

Uranium binding site 2 out of 2 in 1b7h

Go back to Uranium Binding Sites List in 1b7h
Uranium binding site 2 out of 2 in the Oligo-Peptide Binding Protein Complexed with Lysyl- Norleucyl-Lysine


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein Complexed with Lysyl- Norleucyl-Lysine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:42.1
occ:0.50
OE1 A:GLU329 2.5 26.1 1.0
OE2 A:GLU329 2.8 28.7 1.0
CD A:GLU329 2.9 25.3 1.0
CG A:GLU329 4.5 28.5 1.0
CG A:LYS334 4.5 33.1 1.0
CD2 A:PHE333 5.0 34.5 1.0

Reference:

T.G.Davies, R.E.Hubbard, J.R.Tame. Relating Structure to Thermodynamics: the Crystal Structures and Binding Affinity of Eight Oppa-Peptide Complexes. Protein Sci. V. 8 1432 1999.
ISSN: ISSN 0961-8368
PubMed: 10422831
Page generated: Wed Dec 16 02:29:27 2020

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