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Uranium in PDB 1b9j: Oligo-Peptide Binding Protein (Oppa) Complexed with Klk

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Klk, PDB code: 1b9j was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.045, 75.580, 70.455, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 21.9

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Klk (pdb code 1b9j). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Klk, PDB code: 1b9j:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1b9j

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Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Klk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Klk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:19.8
occ:1.00
OD2 A:ASP323 2.3 12.9 1.0
CG A:ASP323 3.2 18.2 1.0
O A:HOH622 3.3 23.7 1.0
OD1 A:ASP323 3.4 20.9 1.0
O A:HOH634 3.4 25.0 1.0
CB A:ASP323 4.6 16.7 1.0
NZ A:LYS157 4.7 13.5 1.0
O A:HOH770 4.7 31.8 1.0
O A:HOH1004 4.9 56.4 1.0
O A:HOH569 5.0 17.3 1.0

Uranium binding site 2 out of 8 in 1b9j

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Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Klk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Klk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:23.9
occ:1.00
O A:HOH531 2.5 12.9 1.0
O A:HOH644 2.6 21.7 1.0
U A:IUM523 4.2 27.4 1.0
O A:HOH547 4.5 16.5 1.0
O A:HOH542 4.7 15.5 1.0
O A:HOH566 4.7 17.7 1.0
O A:HOH1007 4.8 58.5 1.0

Uranium binding site 3 out of 8 in 1b9j

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Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Klk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Klk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:27.4
occ:1.00
O A:HOH542 2.4 15.5 1.0
O A:HOH566 2.4 17.7 1.0
O A:HOH559 2.6 18.6 1.0
OD1 A:ASP459 4.1 46.1 1.0
U A:IUM522 4.2 23.9 1.0
OD2 A:ASP459 4.3 46.9 1.0
O A:HOH654 4.4 24.1 1.0
CG A:ASP459 4.5 45.2 1.0
O A:HOH531 4.6 12.9 1.0
CB A:PRO153 4.8 23.6 1.0
O A:HOH700 4.9 27.9 1.0

Uranium binding site 4 out of 8 in 1b9j

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Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Klk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Klk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:42.6
occ:1.00
O A:HOH656 2.5 24.2 1.0
OE2 A:GLU251 2.6 41.6 1.0
O A:HOH851 2.9 40.8 1.0
O A:HOH745 3.0 31.4 1.0
OD1 A:ASP369 3.4 34.6 1.0
CD A:GLU251 3.7 45.0 1.0
NZ A:LYS373 4.0 38.4 1.0
CG A:ASP369 4.3 32.4 1.0
CG A:GLU251 4.4 45.7 1.0
OE1 A:GLU251 4.5 44.0 1.0
CE A:LYS373 4.7 34.2 1.0
CG2 A:VAL230 4.8 18.9 1.0
CB A:ASP369 4.9 27.1 1.0

Uranium binding site 5 out of 8 in 1b9j

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Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Klk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Klk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:23.4
occ:1.00
OD2 A:ASP362 2.4 13.8 1.0
OD2 A:ASP410 2.4 12.6 1.0
O A:HOH591 2.4 17.4 1.0
CG A:ASP362 3.2 17.1 1.0
CG A:ASP410 3.3 18.7 1.0
OD1 A:ASP410 3.6 19.4 1.0
OD1 A:ASP362 3.8 19.3 1.0
O A:HOH779 4.3 29.7 1.0
CB A:ASP362 4.3 16.9 1.0
NZ A:LYS281 4.3 30.9 1.0
N A:ASP362 4.3 18.6 1.0
O A:HOH778 4.5 31.8 1.0
O A:HOH642 4.6 22.8 1.0
CB A:ASP410 4.6 14.9 1.0
O A:HOH983 4.7 47.7 1.0
CA A:PHE361 4.9 16.8 1.0
CA A:ASP362 5.0 15.6 1.0

Uranium binding site 6 out of 8 in 1b9j

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Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Klk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Klk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U526

b:27.8
occ:0.38
O A:HOH663 2.5 23.7 1.0
OXT A:HIS517 2.7 32.2 1.0
C A:HIS517 3.5 29.1 1.0
O A:HIS517 3.6 34.4 1.0
U A:IUM527 4.1 21.9 0.2
O A:HOH782 4.8 33.5 1.0
CA A:HIS517 4.9 29.1 1.0

Uranium binding site 7 out of 8 in 1b9j

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Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Klk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Klk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U527

b:21.9
occ:0.20
U A:IUM526 4.1 27.8 0.4
O A:HOH663 4.5 23.7 1.0
O A:HOH775 4.7 31.4 1.0
O A:HOH850 4.9 35.6 1.0

Uranium binding site 8 out of 8 in 1b9j

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Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Klk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Klk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U528

b:35.8
occ:0.57
OD2 A:ASP11 2.4 37.0 1.0
CG A:ASP11 3.3 34.6 1.0
CB A:ASP11 3.8 31.3 1.0
OD1 A:ASP11 4.4 30.1 1.0
O A:HOH828 4.9 35.0 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein. J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Wed Dec 16 02:29:27 2020

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