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Uranium in PDB 1efq: Q38D Mutant of Len

Protein crystallography data

The structure of Q38D Mutant of Len, PDB code: 1efq was solved by P.R.Pokkuluri, X.Cai, M.Gu, F.J.Stevens, M.Schiffer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.60
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 65.800, 65.800, 48.100, 90.00, 90.00, 120.00
R / Rfree (%) 23 / 28.8

Other elements in 1efq:

The structure of Q38D Mutant of Len also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Uranium Binding Sites:

The binding sites of Uranium atom in the Q38D Mutant of Len (pdb code 1efq). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total only one binding site of Uranium was determined in the Q38D Mutant of Len, PDB code: 1efq:

Uranium binding site 1 out of 1 in 1efq

Go back to Uranium Binding Sites List in 1efq
Uranium binding site 1 out of 1 in the Q38D Mutant of Len


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Q38D Mutant of Len within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U199

b:12.0
occ:0.50
U A:IUM199 0.0 12.0 0.5
O1 A:IUM199 1.9 11.5 0.5
O2 A:IUM199 1.9 9.0 0.5
OD1 A:ASP38 2.4 15.7 1.0
O A:HOH265 2.5 17.1 0.5
O A:GLN42 2.6 17.8 1.0
OD2 A:ASP38 2.6 15.7 1.0
CG A:ASP38 2.8 14.8 1.0
C A:GLN42 3.8 17.1 1.0
O A:LYS39 3.9 21.9 1.0
O A:HOH231 4.3 24.6 1.0
CB A:ASP38 4.3 14.1 1.0
N A:GLN42 4.5 19.5 1.0
CG A:PRO44 4.5 14.6 1.0
CA A:PRO43 4.5 14.3 1.0
N A:PRO44 4.5 13.1 1.0
C A:PRO43 4.6 13.2 1.0
O A:HOH230 4.6 12.7 1.0
CD A:PRO44 4.6 13.0 1.0
N A:PRO43 4.6 15.0 1.0
CA A:GLN42 4.7 18.8 1.0
O A:HOH224 4.8 28.0 1.0
N A:GLY41 4.9 22.8 1.0
C A:GLY41 4.9 21.3 1.0

Reference:

P.R.Pokkuluri, M.Gu, X.Cai, R.Raffen, F.J.Stevens, M.Schiffer. Factors Contributing to Decreased Protein Stability When Aspartic Acid Residues Are in Beta-Sheet Regions. Protein Sci. V. 11 1687 2002.
ISSN: ISSN 0961-8368
PubMed: 12070321
DOI: 10.1110/PS.4920102
Page generated: Wed Dec 16 02:29:32 2020

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