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Uranium in PDB 1ncj: N-Cadherin, Two-Domain Fragment

Protein crystallography data

The structure of N-Cadherin, Two-Domain Fragment, PDB code: 1ncj was solved by K.Tamura, W.-S.Shan, W.A.Hendrickson, D.R.Colman, L.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 3.40
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 99.000, 99.000, 136.100, 90.00, 90.00, 90.00
R / Rfree (%) 21.2 / 32.1

Other elements in 1ncj:

The structure of N-Cadherin, Two-Domain Fragment also contains other interesting chemical elements:

Calcium (Ca) 3 atoms

Uranium Binding Sites:

The binding sites of Uranium atom in the N-Cadherin, Two-Domain Fragment (pdb code 1ncj). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total only one binding site of Uranium was determined in the N-Cadherin, Two-Domain Fragment, PDB code: 1ncj:

Uranium binding site 1 out of 1 in 1ncj

Go back to Uranium Binding Sites List in 1ncj
Uranium binding site 1 out of 1 in the N-Cadherin, Two-Domain Fragment


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of N-Cadherin, Two-Domain Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U401

b:13.6
occ:0.50
OD2 A:ASP215 1.6 38.6 1.0
OD1 A:ASP215 1.7 37.9 1.0
CG A:ASP215 2.0 42.1 1.0
CB A:ASP215 3.5 41.5 1.0
CA A:ASP215 4.3 39.0 1.0
H A:ASP215 4.8 0.0 0.0
N A:ASP215 4.9 40.0 1.0

Reference:

K.Tamura, W.S.Shan, W.A.Hendrickson, D.R.Colman, L.Shapiro. Structure-Function Analysis of Cell Adhesion By Neural (N-) Cadherin. Neuron V. 20 1153 1998.
ISSN: ISSN 0896-6273
PubMed: 9655503
DOI: 10.1016/S0896-6273(00)80496-1
Page generated: Thu Oct 29 07:03:35 2020

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