Uranium in the structure of Oligo-Peptide Binding Protein (Oppa) Complexed With Lys-Lys- Lys-Ala (pdb 1olc)

The binding sites of Uranium atom in the structure of Oligo-Peptide Binding Protein (Oppa) Complexed With Lys-Lys- Lys-Ala (pdb code 1olc). This binding sites where shown with 5.0 Angstroms radius around Uranium atom. The 1olc structure was solved by J.TAME, A.J.WILKINSON, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 10.0-2.1 Space group P212121 a (A) 110.730 b (A) 77.080 c (A) 71.330 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) n/a Rfree (%) n/a Uranium Binding Sites: Uranium binding site 1 out of 8 in 1olc Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Uranium in the PDB 1olc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys157, A: Asp323, A: Ium518, A: Hoh526, A: Hoh527, A: Hoh597, A: Hoh610, A: Hoh629, A: Hoh630, A: Hoh690, conact list: Atom Atom Distance (A) U NZ A:Lys157 4.80 U CB A:Asp323 4.77 U OD2 A:Asp323 2.51 U OD1 A:Asp323 3.52 U CG A:Asp323 3.39 U O1 A:Ium518 1.90 U O2 A:Ium518 1.73 U U A:Ium518 0.00 U O A:Hoh526 4.21 U O A:Hoh527 2.60 U O A:Hoh597 3.04 U O A:Hoh610 3.06 U O A:Hoh629 4.98 U O A:Hoh630 4.81 U O A:Hoh690 4.69 interactive model: Uranium binding site 2 out of 8 in 1olc Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Uranium in the PDB 1olc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ium519, A: Ium520, A: Hoh537, A: Hoh555, A: Hoh568, A: Hoh583, A: Hoh593, A: Hoh610, A: Hoh620, A: Hoh629, conact list: Atom Atom Distance (A) U O1 A:Ium519 1.89 U O2 A:Ium519 2.13 U U A:Ium519 0.00 U O2 A:Ium520 3.96 U U A:Ium520 4.16 U O A:Hoh537 3.84 U O A:Hoh555 2.69 U O A:Hoh568 4.94 U O A:Hoh583 2.73 U O A:Hoh593 4.52 U O A:Hoh610 4.98 U O A:Hoh620 3.04 U O A:Hoh629 4.46 interactive model: Uranium binding site 3 out of 8 in 1olc Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Uranium in the PDB 1olc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Pro153, A: Asp459, A: Arg462, A: Ium519, A: Ium520, A: Hoh555, A: Hoh566, A: Hoh568, A: Hoh583, A: Hoh584, A: Hoh638, conact list: Atom Atom Distance (A) U CB A:Pro153 4.90 U OD2 A:Asp459 4.27 U OD1 A:Asp459 3.69 U CG A:Asp459 4.30 U NH1 A:Arg462 4.93 U O1 A:Ium519 2.72 U U A:Ium519 4.16 U O1 A:Ium520 1.89 U O2 A:Ium520 1.98 U U A:Ium520 0.00 U O A:Hoh555 4.91 U O A:Hoh566 3.68 U O A:Hoh568 3.03 U O A:Hoh583 4.79 U O A:Hoh584 3.26 U O A:Hoh638 3.49 interactive model: Uranium binding site 4 out of 8 in 1olc Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Uranium in the PDB 1olc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Val230, A: Glu251, A: Asp369, A: Lys373, A: Ium521, A: Hoh612, A: Hoh622, A: Hoh815, conact list: Atom Atom Distance (A) U CG2 A:Val230 4.80 U OE1 A:Glu251 3.22 U OE2 A:Glu251 3.07 U CD A:Glu251 3.41 U CG A:Glu251 4.70 U CB A:Asp369 4.88 U OD2 A:Asp369 3.96 U OD1 A:Asp369 2.87 U CG A:Asp369 3.66 U CE A:Lys373 4.43 U NZ A:Lys373 4.38 U O1 A:Ium521 2.05 U O2 A:Ium521 1.81 U U A:Ium521 0.00 U O A:Hoh612 3.09 U O A:Hoh622 3.45 U O A:Hoh815 4.95 interactive model: Uranium binding site 5 out of 8 in 1olc Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Uranium in the PDB 1olc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Lys281, A: Phe361, A: Asp362, A: Asp410, A: Ium522, A: Hoh678, A: Hoh692, conact list: Atom Atom Distance (A) U NZ A:Lys281 4.56 U C A:Phe361 4.85 U CA A:Phe361 4.73 U N A:Asp362 4.25 U CB A:Asp362 4.44 U OD2 A:Asp362 2.41 U OD1 A:Asp362 3.87 U CG A:Asp362 3.35 U CA A:Asp362 4.98 U CB A:Asp410 4.86 U OD2 A:Asp410 2.69 U OD1 A:Asp410 3.56 U CG A:Asp410 3.46 U O1 A:Ium522 1.67 U O2 A:Ium522 1.75 U U A:Ium522 0.00 U O A:Hoh678 4.59 U O A:Hoh692 3.76 interactive model: Uranium binding site 6 out of 8 in 1olc Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Uranium in the PDB 1olc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: His517, A: Ium524, A: Hoh654, A: Hoh739, A: Hoh755, A: Hoh788, conact list: Atom Atom Distance (A) U O A:His517 3.07 U CD2 A:His517 4.96 U C A:His517 3.25 U CA A:His517 4.77 U OXT A:His517 2.86 U U A:Ium524 4.14 U O A:Hoh654 4.81 U O A:Hoh739 2.66 U O A:Hoh755 4.52 U O A:Hoh788 2.70 interactive model: Uranium binding site 7 out of 8 in 1olc Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Uranium in the PDB 1olc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Ium523, A: Hoh679, A: Hoh727, A: Hoh773, A: Hoh788, A: Hoh799, conact list: Atom Atom Distance (A) U U A:Ium523 4.14 U O A:Hoh679 3.51 U O A:Hoh727 3.35 U O A:Hoh773 4.86 U O A:Hoh788 4.64 U O A:Hoh799 3.81 interactive model: Uranium binding site 8 out of 8 in 1olc Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Uranium in the PDB 1olc. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Asp11, A: Lys12, A: Hoh681, A: Hoh714, A: Hoh727, A: Hoh773, conact list: Atom Atom Distance (A) U CB A:Asp11 3.74 U OD2 A:Asp11 3.89 U OD1 A:Asp11 4.61 U CG A:Asp11 3.86 U CE A:Lys12 4.92 U NZ A:Lys12 3.80 U O A:Hoh681 3.63 U O A:Hoh714 3.36 U O A:Hoh727 4.57 U O A:Hoh773 3.17 interactive model: