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Uranium in PDB 1olc: Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala, PDB code: 1olc was solved by J.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.730, 77.080, 71.330, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala (pdb code 1olc). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala, PDB code: 1olc:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1olc

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Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:13.1
occ:1.00
 U A:IUM518 0.0 13.1 1.0
O2 A:IUM518 1.7 2.5 1.0
O1 A:IUM518 1.9 2.8 1.0
OD2 A:ASP323 2.5 14.7 1.0
O A:HOH527 2.6 5.7 1.0
O A:HOH597 3.0 18.3 1.0
O A:HOH610 3.1 19.6 1.0
CG A:ASP323 3.4 14.0 1.0
OD1 A:ASP323 3.5 12.4 1.0
O A:HOH526 4.2 5.3 1.0
O A:HOH690 4.7 32.1 1.0
CB A:ASP323 4.8 9.2 1.0
NZ A:LYS157 4.8 8.7 1.0
O A:HOH630 4.8 22.9 1.0
O A:HOH629 5.0 22.6 1.0

Uranium binding site 2 out of 8 in 1olc

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Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:18.9
occ:1.00
 U A:IUM519 0.0 18.9 1.0
O1 A:IUM519 1.9 7.7 1.0
O2 A:IUM519 2.1 19.6 1.0
O A:HOH555 2.7 12.3 1.0
O A:HOH583 2.7 16.7 1.0
O A:HOH620 3.0 21.5 1.0
O A:HOH537 3.8 10.4 1.0
O2 A:IUM520 4.0 6.5 1.0
U A:IUM520 4.2 20.0 1.0
O A:HOH629 4.5 22.6 1.0
O A:HOH593 4.5 17.8 1.0
O A:HOH568 4.9 14.2 1.0
O A:HOH610 5.0 19.6 1.0

Uranium binding site 3 out of 8 in 1olc

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Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:20.0
occ:1.00
 U A:IUM520 0.0 20.0 1.0
O1 A:IUM520 1.9 14.8 1.0
O2 A:IUM520 2.0 6.5 1.0
O1 A:IUM519 2.7 7.7 1.0
O A:HOH568 3.0 14.2 1.0
O A:HOH584 3.3 16.7 1.0
O A:HOH638 3.5 25.4 1.0
O A:HOH566 3.7 13.8 1.0
OD1 A:ASP459 3.7 60.1 1.0
U A:IUM519 4.2 18.9 1.0
OD2 A:ASP459 4.3 67.8 1.0
CG A:ASP459 4.3 53.2 1.0
O A:HOH583 4.8 16.7 1.0
CB A:PRO153 4.9 12.1 1.0
O A:HOH555 4.9 12.3 1.0
NH1 A:ARG462 4.9 28.7 1.0

Uranium binding site 4 out of 8 in 1olc

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Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:23.5
occ:1.00
 U A:IUM521 0.0 23.5 1.0
O2 A:IUM521 1.8 11.6 1.0
O1 A:IUM521 2.0 21.1 1.0
OD1 A:ASP369 2.9 41.9 1.0
OE2 A:GLU251 3.1 50.4 1.0
O A:HOH612 3.1 20.1 1.0
OE1 A:GLU251 3.2 64.3 1.0
CD A:GLU251 3.4 34.4 1.0
O A:HOH622 3.4 21.7 1.0
CG A:ASP369 3.7 40.2 1.0
OD2 A:ASP369 4.0 48.3 1.0
NZ A:LYS373 4.4 41.6 1.0
CE A:LYS373 4.4 44.9 1.0
CG A:GLU251 4.7 44.9 1.0
CG2 A:VAL230 4.8 15.2 1.0
CB A:ASP369 4.9 28.9 1.0
O A:HOH815 5.0 53.7 1.0

Uranium binding site 5 out of 8 in 1olc

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Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:19.6
occ:1.00
 U A:IUM522 0.0 19.6 1.0
O1 A:IUM522 1.7 3.8 1.0
O2 A:IUM522 1.8 4.0 1.0
OD2 A:ASP362 2.4 20.2 1.0
OD2 A:ASP410 2.7 19.1 1.0
CG A:ASP362 3.4 14.9 1.0
CG A:ASP410 3.5 17.5 1.0
OD1 A:ASP410 3.6 10.6 1.0
O A:HOH692 3.8 32.2 1.0
OD1 A:ASP362 3.9 14.0 1.0
N A:ASP362 4.2 14.6 1.0
CB A:ASP362 4.4 6.3 1.0
NZ A:LYS281 4.6 45.9 1.0
O A:HOH678 4.6 30.9 1.0
CA A:PHE361 4.7 17.2 1.0
C A:PHE361 4.9 15.3 1.0
CB A:ASP410 4.9 10.0 1.0
CA A:ASP362 5.0 10.0 1.0

Uranium binding site 6 out of 8 in 1olc

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Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:37.9
occ:1.00
 O A:HOH739 2.7 38.9 1.0
O A:HOH788 2.7 46.2 1.0
OXT A:HIS517 2.9 17.2 1.0
O A:HIS517 3.1 26.8 1.0
C A:HIS517 3.2 25.6 1.0
U A:IUM524 4.1 45.6 1.0
O A:HOH755 4.5 41.5 1.0
CA A:HIS517 4.8 24.6 1.0
O A:HOH654 4.8 27.9 1.0
CD2 A:HIS517 5.0 21.4 1.0

Uranium binding site 7 out of 8 in 1olc

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Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:45.6
occ:1.00
 O A:HOH727 3.4 36.9 1.0
O A:HOH679 3.5 31.0 1.0
O A:HOH799 3.8 47.9 1.0
U A:IUM523 4.1 37.9 1.0
O A:HOH788 4.6 46.2 1.0
O A:HOH773 4.9 43.5 1.0

Uranium binding site 8 out of 8 in 1olc

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Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:51.8
occ:1.00
 O A:HOH773 3.2 43.5 1.0
O A:HOH714 3.4 34.6 1.0
O A:HOH681 3.6 31.0 1.0
CB A:ASP11 3.7 37.9 1.0
NZ A:LYS12 3.8 84.6 0.0
CG A:ASP11 3.9 43.0 1.0
OD2 A:ASP11 3.9 67.8 1.0
O A:HOH727 4.6 36.9 1.0
OD1 A:ASP11 4.6 52.1 1.0
CE A:LYS12 4.9 90.7 0.0

Reference:

J.R.Tame, E.J.Dodson, G.Murshudov, C.F.Higgins, A.J.Wilkinson. The Crystal Structures of the Oligopeptide-Binding Protein Oppa Complexed with Tripeptide and Tetrapeptide Ligands. Structure V. 3 1395 1995.
ISSN: ISSN 0969-2126
PubMed: 8747465
DOI: 10.1016/S0969-2126(01)00276-3
Page generated: Wed Dec 16 02:29:36 2020

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