Atomistry » Uranium » PDB 1anv-2olb » 1olc
Atomistry »
  Uranium »
    PDB 1anv-2olb »
      1olc »

Uranium in PDB 1olc: Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala, PDB code: 1olc was solved by J.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 110.730, 77.080, 71.330, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Uranium Binding Sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala (pdb code 1olc). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala, PDB code: 1olc:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in 1olc

Go back to Uranium Binding Sites List in 1olc
Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U518

b:13.1
occ:1.00
 U A:IUM518 0.0 13.1 1.0
O2 A:IUM518 1.7 2.5 1.0
O1 A:IUM518 1.9 2.8 1.0
OD2 A:ASP323 2.5 14.7 1.0
O A:HOH527 2.6 5.7 1.0
O A:HOH597 3.0 18.3 1.0
O A:HOH610 3.1 19.6 1.0
CG A:ASP323 3.4 14.0 1.0
OD1 A:ASP323 3.5 12.4 1.0
O A:HOH526 4.2 5.3 1.0
O A:HOH690 4.7 32.1 1.0
CB A:ASP323 4.8 9.2 1.0
NZ A:LYS157 4.8 8.7 1.0
O A:HOH630 4.8 22.9 1.0
O A:HOH629 5.0 22.6 1.0

Uranium binding site 2 out of 8 in 1olc

Go back to Uranium Binding Sites List in 1olc
Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U519

b:18.9
occ:1.00
 U A:IUM519 0.0 18.9 1.0
O1 A:IUM519 1.9 7.7 1.0
O2 A:IUM519 2.1 19.6 1.0
O A:HOH555 2.7 12.3 1.0
O A:HOH583 2.7 16.7 1.0
O A:HOH620 3.0 21.5 1.0
O A:HOH537 3.8 10.4 1.0
O2 A:IUM520 4.0 6.5 1.0
U A:IUM520 4.2 20.0 1.0
O A:HOH629 4.5 22.6 1.0
O A:HOH593 4.5 17.8 1.0
O A:HOH568 4.9 14.2 1.0
O A:HOH610 5.0 19.6 1.0

Uranium binding site 3 out of 8 in 1olc

Go back to Uranium Binding Sites List in 1olc
Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U520

b:20.0
occ:1.00
 U A:IUM520 0.0 20.0 1.0
O1 A:IUM520 1.9 14.8 1.0
O2 A:IUM520 2.0 6.5 1.0
O1 A:IUM519 2.7 7.7 1.0
O A:HOH568 3.0 14.2 1.0
O A:HOH584 3.3 16.7 1.0
O A:HOH638 3.5 25.4 1.0
O A:HOH566 3.7 13.8 1.0
OD1 A:ASP459 3.7 60.1 1.0
U A:IUM519 4.2 18.9 1.0
OD2 A:ASP459 4.3 67.8 1.0
CG A:ASP459 4.3 53.2 1.0
O A:HOH583 4.8 16.7 1.0
CB A:PRO153 4.9 12.1 1.0
O A:HOH555 4.9 12.3 1.0
NH1 A:ARG462 4.9 28.7 1.0

Uranium binding site 4 out of 8 in 1olc

Go back to Uranium Binding Sites List in 1olc
Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U521

b:23.5
occ:1.00
 U A:IUM521 0.0 23.5 1.0
O2 A:IUM521 1.8 11.6 1.0
O1 A:IUM521 2.0 21.1 1.0
OD1 A:ASP369 2.9 41.9 1.0
OE2 A:GLU251 3.1 50.4 1.0
O A:HOH612 3.1 20.1 1.0
OE1 A:GLU251 3.2 64.3 1.0
CD A:GLU251 3.4 34.4 1.0
O A:HOH622 3.4 21.7 1.0
CG A:ASP369 3.7 40.2 1.0
OD2 A:ASP369 4.0 48.3 1.0
NZ A:LYS373 4.4 41.6 1.0
CE A:LYS373 4.4 44.9 1.0
CG A:GLU251 4.7 44.9 1.0
CG2 A:VAL230 4.8 15.2 1.0
CB A:ASP369 4.9 28.9 1.0
O A:HOH815 5.0 53.7 1.0

Uranium binding site 5 out of 8 in 1olc

Go back to Uranium Binding Sites List in 1olc
Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U522

b:19.6
occ:1.00
 U A:IUM522 0.0 19.6 1.0
O1 A:IUM522 1.7 3.8 1.0
O2 A:IUM522 1.8 4.0 1.0
OD2 A:ASP362 2.4 20.2 1.0
OD2 A:ASP410 2.7 19.1 1.0
CG A:ASP362 3.4 14.9 1.0
CG A:ASP410 3.5 17.5 1.0
OD1 A:ASP410 3.6 10.6 1.0
O A:HOH692 3.8 32.2 1.0
OD1 A:ASP362 3.9 14.0 1.0
N A:ASP362 4.2 14.6 1.0
CB A:ASP362 4.4 6.3 1.0
NZ A:LYS281 4.6 45.9 1.0
O A:HOH678 4.6 30.9 1.0
CA A:PHE361 4.7 17.2 1.0
C A:PHE361 4.9 15.3 1.0
CB A:ASP410 4.9 10.0 1.0
CA A:ASP362 5.0 10.0 1.0

Uranium binding site 6 out of 8 in 1olc

Go back to Uranium Binding Sites List in 1olc
Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U523

b:37.9
occ:1.00
 O A:HOH739 2.7 38.9 1.0
O A:HOH788 2.7 46.2 1.0
OXT A:HIS517 2.9 17.2 1.0
O A:HIS517 3.1 26.8 1.0
C A:HIS517 3.2 25.6 1.0
U A:IUM524 4.1 45.6 1.0
O A:HOH755 4.5 41.5 1.0
CA A:HIS517 4.8 24.6 1.0
O A:HOH654 4.8 27.9 1.0
CD2 A:HIS517 5.0 21.4 1.0

Uranium binding site 7 out of 8 in 1olc

Go back to Uranium Binding Sites List in 1olc
Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U524

b:45.6
occ:1.00
 O A:HOH727 3.4 36.9 1.0
O A:HOH679 3.5 31.0 1.0
O A:HOH799 3.8 47.9 1.0
U A:IUM523 4.1 37.9 1.0
O A:HOH788 4.6 46.2 1.0
O A:HOH773 4.9 43.5 1.0

Uranium binding site 8 out of 8 in 1olc

Go back to Uranium Binding Sites List in 1olc
Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Lys-Lys- Lys-Ala within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U525

b:51.8
occ:1.00
 O A:HOH773 3.2 43.5 1.0
O A:HOH714 3.4 34.6 1.0
O A:HOH681 3.6 31.0 1.0
CB A:ASP11 3.7 37.9 1.0
NZ A:LYS12 3.8 84.6 0.0
CG A:ASP11 3.9 43.0 1.0
OD2 A:ASP11 3.9 67.8 1.0
O A:HOH727 4.6 36.9 1.0
OD1 A:ASP11 4.6 52.1 1.0
CE A:LYS12 4.9 90.7 0.0

Reference:

J.R.Tame, E.J.Dodson, G.Murshudov, C.F.Higgins, A.J.Wilkinson. The Crystal Structures of the Oligopeptide-Binding Protein Oppa Complexed with Tripeptide and Tetrapeptide Ligands. Structure V. 3 1395 1995.
ISSN: ISSN 0969-2126
PubMed: 8747465
DOI: 10.1016/S0969-2126(01)00276-3
Page generated: Thu Oct 29 07:03:38 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy