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Uranium in PDB 1qka: Oligo-Peptide Binding Protein (Oppa) Complexed with Krk

Protein crystallography data

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Krk, PDB code: 1qka was solved by J.R.H.Tame, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 109.926, 75.446, 70.061, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 22.2

Uranium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk (pdb code 1qka). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 11 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk, PDB code: 1qka:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Uranium binding site 1 out of 11 in 1qka

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Uranium binding site 1 out of 11 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Krk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U601

b:13.2
occ:0.89
OD2 A:ASP323 2.3 10.9 1.0
CG A:ASP323 3.2 13.4 1.0
OD1 A:ASP323 3.5 12.4 1.0
O A:HOH706 3.9 26.0 1.0
CB A:ASP323 4.6 14.7 1.0
NZ A:LYS157 4.7 12.9 1.0

Uranium binding site 2 out of 11 in 1qka

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Uranium binding site 2 out of 11 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Krk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U602

b:14.0
occ:0.80
O A:HOH1073 4.2 31.3 1.0
U A:IUM603 4.2 17.4 0.9
O A:HOH701 4.8 18.4 1.0

Uranium binding site 3 out of 11 in 1qka

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Uranium binding site 3 out of 11 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Krk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U603

b:17.4
occ:0.92
O A:HOH701 2.5 18.4 1.0
OD2 A:ASP459 3.6 53.2 0.0
U A:IUM602 4.2 14.0 0.8
O A:HOH1073 4.7 31.3 1.0
CG A:ASP459 4.8 52.4 0.0
CB A:PRO153 4.8 20.0 1.0
O A:HOH1113 4.9 26.2 1.0

Uranium binding site 4 out of 11 in 1qka

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Uranium binding site 4 out of 11 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Krk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U604

b:17.0
occ:0.84
OD2 A:ASP369 2.2 23.2 1.0
OE2 A:GLU251 2.3 24.8 1.0
CG A:ASP369 3.2 29.0 1.0
OD1 A:ASP369 3.4 30.3 1.0
CD A:GLU251 3.5 26.6 1.0
NZ A:LYS373 3.5 34.4 1.0
O A:HOH746 4.3 39.0 1.0
OE1 A:GLU251 4.3 21.6 1.0
CG A:GLU251 4.3 24.6 1.0
O A:HOH1051 4.3 30.1 1.0
CB A:ASP369 4.6 20.9 1.0
CG2 A:VAL230 4.7 17.9 1.0
O A:HOH893 4.8 37.6 1.0
CE A:LYS373 4.8 30.7 1.0

Uranium binding site 5 out of 11 in 1qka

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Uranium binding site 5 out of 11 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Krk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U605

b:19.3
occ:0.84
OD2 A:ASP362 2.3 13.7 1.0
OD2 A:ASP410 2.4 12.9 1.0
CG A:ASP362 3.2 17.2 1.0
CG A:ASP410 3.3 15.9 1.0
OD1 A:ASP410 3.6 22.9 1.0
OD1 A:ASP362 3.8 18.9 1.0
NZ A:LYS281 4.2 28.9 1.0
O A:HOH767 4.2 37.4 1.0
O A:HOH814 4.2 32.5 1.0
N A:ASP362 4.3 16.8 1.0
CB A:ASP362 4.3 13.4 1.0
CB A:ASP410 4.6 15.4 1.0
O A:HOH709 4.7 24.0 1.0
CA A:PHE361 4.8 16.2 1.0
C A:PHE361 5.0 14.6 1.0
CA A:ASP362 5.0 12.5 1.0

Uranium binding site 6 out of 11 in 1qka

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Uranium binding site 6 out of 11 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Krk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U606

b:32.7
occ:0.52
O A:HOH714 2.2 14.7 1.0
OXT A:HIS517 2.7 23.1 1.0
C A:HIS517 3.5 24.8 1.0
O A:HIS517 3.6 26.2 1.0
U A:IUM607 4.1 35.8 0.5
O A:HOH1127 4.4 35.7 1.0
O A:HOH943 4.6 29.6 1.0
O A:HOH1111 4.7 47.8 1.0
CA A:HIS517 5.0 23.8 1.0

Uranium binding site 7 out of 11 in 1qka

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Uranium binding site 7 out of 11 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Krk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U607

b:35.8
occ:0.49
O A:HOH1150 2.8 34.8 1.0
U A:IUM606 4.1 32.7 0.5
O A:HOH714 4.5 14.7 1.0
O A:HOH1127 4.5 35.7 1.0
O A:HOH1043 4.5 30.4 1.0
O A:HOH1104 4.9 36.7 1.0

Uranium binding site 8 out of 11 in 1qka

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Uranium binding site 8 out of 11 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Krk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U608

b:32.1
occ:0.64
OD2 A:ASP11 2.6 36.2 1.0
CG A:ASP11 3.7 33.5 1.0
CB A:ASP11 4.0 27.8 1.0
O A:HOH1150 4.7 34.8 1.0
OD1 A:ASP11 4.8 33.9 1.0
O A:HOH1106 5.0 35.1 1.0

Uranium binding site 9 out of 11 in 1qka

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Uranium binding site 9 out of 11 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 9 of Oligo-Peptide Binding Protein (Oppa) Complexed with Krk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U609

b:19.1
occ:0.19
OE1 A:GLN220 2.3 22.1 1.0
NZ A:LYS194 2.3 35.2 1.0
CD A:GLN220 3.4 20.7 1.0
CE A:LYS194 3.5 32.1 1.0
CD A:LYS194 3.6 27.1 1.0
NE2 A:GLN220 4.0 21.2 1.0
CG A:GLN220 4.6 19.2 1.0
CG1 A:VAL203 4.8 14.8 1.0

Uranium binding site 10 out of 11 in 1qka

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Uranium binding site 10 out of 11 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Krk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 10 of Oligo-Peptide Binding Protein (Oppa) Complexed with Krk within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U610

b:23.2
occ:0.22
U A:IUM611 4.1 23.8 0.2
CB A:ALA349 4.3 35.4 1.0
O A:HOH1151 4.6 48.9 1.0

Reference:

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.H.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929
Page generated: Thu Oct 29 07:03:37 2020

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