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Uranium in PDB 1uyj: Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin

Protein crystallography data

The structure of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin, PDB code: 1uyj was solved by A.R.Cole, M.Gibert, M.Poppoff, D.S.Moss, R.W.Titball, A.K.Basak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.6
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 125.962, 125.962, 121.862, 90.00, 90.00, 120.00
R / Rfree (%) 23.631 / 29.006

Uranium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Uranium atom in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin (pdb code 1uyj). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 12 binding sites of Uranium where determined in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin, PDB code: 1uyj:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Uranium binding site 1 out of 12 in 1uyj

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Uranium binding site 1 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1296

b:58.6
occ:1.00
OE2 A:GLU251 2.6 42.0 1.0
OE1 A:GLU137 2.7 51.1 1.0
CD A:GLU137 3.5 51.4 1.0
OE2 A:GLU137 3.6 52.7 1.0
CD A:GLU251 3.6 38.0 1.0
CG A:GLU251 4.0 35.5 1.0
OE1 A:GLU251 4.7 43.1 1.0
CG A:GLU137 4.8 50.2 1.0

Uranium binding site 2 out of 12 in 1uyj

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Uranium binding site 2 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1297

b:67.8
occ:0.20
OE1 A:GLU70 2.5 57.5 1.0
CD A:GLU70 3.4 56.0 1.0
OE2 A:GLU70 3.4 57.2 1.0
CE A:LYS193 4.7 50.6 1.0
CG A:GLU70 4.8 52.8 1.0

Uranium binding site 3 out of 12 in 1uyj

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Uranium binding site 3 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:

Uranium binding site 4 out of 12 in 1uyj

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Uranium binding site 4 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1296

b:57.7
occ:1.00
OE1 B:GLU137 2.9 46.1 1.0
OE2 B:GLU251 2.9 43.3 1.0
OE2 B:GLU137 3.1 44.4 1.0
CD B:GLU137 3.3 45.0 1.0
CD B:GLU251 3.9 41.6 1.0
CG B:GLU251 4.2 38.0 1.0
CG B:GLU137 4.8 45.8 1.0
OE1 B:GLU251 5.0 45.5 1.0

Uranium binding site 5 out of 12 in 1uyj

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Uranium binding site 5 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1297

b:69.2
occ:0.20
OE1 B:GLU70 2.3 58.3 1.0
OE2 B:GLU70 2.3 60.4 1.0
CD B:GLU70 2.7 56.9 1.0
CG B:GLU70 4.2 52.4 1.0
CE B:LYS193 4.5 48.6 1.0
CG2 B:VAL195 4.9 45.0 1.0
CB B:GLU70 5.0 49.7 1.0

Uranium binding site 6 out of 12 in 1uyj

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Uranium binding site 6 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1298

b:63.6
occ:0.20
OE2 B:GLU232 2.1 66.4 1.0
OE1 B:GLU232 2.3 66.6 1.0
CD B:GLU232 2.6 67.7 1.0
CG B:GLU232 4.1 68.0 1.0
CB B:GLU232 4.9 68.4 1.0

Uranium binding site 7 out of 12 in 1uyj

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Uranium binding site 7 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1299

b:59.4
occ:0.30
O B:HOH2012 2.6 29.9 0.3

Uranium binding site 8 out of 12 in 1uyj

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Uranium binding site 8 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1300

b:74.0
occ:0.20
CB B:ARG28 4.4 58.6 1.0
CG2 B:ILE55 4.6 63.2 1.0
N B:TYR29 4.8 59.1 1.0
CG B:LYS26 4.9 59.7 1.0
C B:ARG28 5.0 58.9 1.0
CD B:ARG28 5.0 56.4 1.0

Uranium binding site 9 out of 12 in 1uyj

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Uranium binding site 9 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 9 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:U1296

b:51.8
occ:1.00
OE2 C:GLU251 2.6 41.2 1.0
OE1 C:GLU137 2.8 44.0 1.0
CD C:GLU251 3.3 36.3 1.0
CD C:GLU137 3.5 45.3 1.0
OE2 C:GLU137 3.6 44.2 1.0
OE1 C:GLU251 3.8 37.5 1.0
CG C:GLU251 4.2 33.3 1.0
CG C:GLU137 4.8 46.3 1.0

Uranium binding site 10 out of 12 in 1uyj

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Uranium binding site 10 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 10 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:U1297

b:57.6
occ:0.30
CE C:LYS255 2.6 42.0 1.0
OE1 C:GLU266 3.8 45.0 1.0
CD C:LYS255 3.8 39.8 1.0
OH C:TYR182 4.3 37.7 1.0
CG C:LYS255 4.5 36.3 1.0
CD C:GLU266 4.6 43.3 1.0

Reference:

A.R.Cole, M.Gibert, M.Popoff, D.S.Moss, R.W.Titball, A.K.Basak. Clostridium Perfringens Epsilon-Toxin Shows Structural Similarity to the Pore-Forming Toxin Aerolysin Nat.Struct.Mol.Biol. V. 11 797 2004.
ISSN: ISSN 1545-9993
PubMed: 15258571
DOI: 10.1038/NSMB804
Page generated: Wed Dec 16 02:29:39 2020

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