Atomistry » Uranium » PDB 1anv-2olb » 1uyj
Atomistry »
  Uranium »
    PDB 1anv-2olb »
      1uyj »

Uranium in PDB 1uyj: Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin

Protein crystallography data

The structure of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin, PDB code: 1uyj was solved by A.R.Cole, M.Gibert, M.Poppoff, D.S.Moss, R.W.Titball, A.K.Basak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.6
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 125.962, 125.962, 121.862, 90.00, 90.00, 120.00
R / Rfree (%) 23.631 / 29.006

Uranium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Uranium atom in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin (pdb code 1uyj). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 12 binding sites of Uranium where determined in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin, PDB code: 1uyj:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Uranium binding site 1 out of 12 in 1uyj

Go back to Uranium Binding Sites List in 1uyj
Uranium binding site 1 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1296

b:58.6
occ:1.00
OE2 A:GLU251 2.6 42.0 1.0
OE1 A:GLU137 2.7 51.1 1.0
CD A:GLU137 3.5 51.4 1.0
OE2 A:GLU137 3.6 52.7 1.0
CD A:GLU251 3.6 38.0 1.0
CG A:GLU251 4.0 35.5 1.0
OE1 A:GLU251 4.7 43.1 1.0
CG A:GLU137 4.8 50.2 1.0

Uranium binding site 2 out of 12 in 1uyj

Go back to Uranium Binding Sites List in 1uyj
Uranium binding site 2 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1297

b:67.8
occ:0.20
OE1 A:GLU70 2.5 57.5 1.0
CD A:GLU70 3.4 56.0 1.0
OE2 A:GLU70 3.4 57.2 1.0
CE A:LYS193 4.7 50.6 1.0
CG A:GLU70 4.8 52.8 1.0

Uranium binding site 3 out of 12 in 1uyj

Go back to Uranium Binding Sites List in 1uyj
Uranium binding site 3 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:

Uranium binding site 4 out of 12 in 1uyj

Go back to Uranium Binding Sites List in 1uyj
Uranium binding site 4 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1296

b:57.7
occ:1.00
OE1 B:GLU137 2.9 46.1 1.0
OE2 B:GLU251 2.9 43.3 1.0
OE2 B:GLU137 3.1 44.4 1.0
CD B:GLU137 3.3 45.0 1.0
CD B:GLU251 3.9 41.6 1.0
CG B:GLU251 4.2 38.0 1.0
CG B:GLU137 4.8 45.8 1.0
OE1 B:GLU251 5.0 45.5 1.0

Uranium binding site 5 out of 12 in 1uyj

Go back to Uranium Binding Sites List in 1uyj
Uranium binding site 5 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1297

b:69.2
occ:0.20
OE1 B:GLU70 2.3 58.3 1.0
OE2 B:GLU70 2.3 60.4 1.0
CD B:GLU70 2.7 56.9 1.0
CG B:GLU70 4.2 52.4 1.0
CE B:LYS193 4.5 48.6 1.0
CG2 B:VAL195 4.9 45.0 1.0
CB B:GLU70 5.0 49.7 1.0

Uranium binding site 6 out of 12 in 1uyj

Go back to Uranium Binding Sites List in 1uyj
Uranium binding site 6 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1298

b:63.6
occ:0.20
OE2 B:GLU232 2.1 66.4 1.0
OE1 B:GLU232 2.3 66.6 1.0
CD B:GLU232 2.6 67.7 1.0
CG B:GLU232 4.1 68.0 1.0
CB B:GLU232 4.9 68.4 1.0

Uranium binding site 7 out of 12 in 1uyj

Go back to Uranium Binding Sites List in 1uyj
Uranium binding site 7 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1299

b:59.4
occ:0.30
O B:HOH2012 2.6 29.9 0.3

Uranium binding site 8 out of 12 in 1uyj

Go back to Uranium Binding Sites List in 1uyj
Uranium binding site 8 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1300

b:74.0
occ:0.20
CB B:ARG28 4.4 58.6 1.0
CG2 B:ILE55 4.6 63.2 1.0
N B:TYR29 4.8 59.1 1.0
CG B:LYS26 4.9 59.7 1.0
C B:ARG28 5.0 58.9 1.0
CD B:ARG28 5.0 56.4 1.0

Uranium binding site 9 out of 12 in 1uyj

Go back to Uranium Binding Sites List in 1uyj
Uranium binding site 9 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 9 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:U1296

b:51.8
occ:1.00
OE2 C:GLU251 2.6 41.2 1.0
OE1 C:GLU137 2.8 44.0 1.0
CD C:GLU251 3.3 36.3 1.0
CD C:GLU137 3.5 45.3 1.0
OE2 C:GLU137 3.6 44.2 1.0
OE1 C:GLU251 3.8 37.5 1.0
CG C:GLU251 4.2 33.3 1.0
CG C:GLU137 4.8 46.3 1.0

Uranium binding site 10 out of 12 in 1uyj

Go back to Uranium Binding Sites List in 1uyj
Uranium binding site 10 out of 12 in the Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 10 of Clostridium Perfringens Epsilon Toxin Shows Structural Similarity with the Pore Forming Toxin Aerolysin within 5.0Å range:
probe atom residue distance (Å) B Occ
C:U1297

b:57.6
occ:0.30
CE C:LYS255 2.6 42.0 1.0
OE1 C:GLU266 3.8 45.0 1.0
CD C:LYS255 3.8 39.8 1.0
OH C:TYR182 4.3 37.7 1.0
CG C:LYS255 4.5 36.3 1.0
CD C:GLU266 4.6 43.3 1.0

Reference:

A.R.Cole, M.Gibert, M.Popoff, D.S.Moss, R.W.Titball, A.K.Basak. Clostridium Perfringens Epsilon-Toxin Shows Structural Similarity to the Pore-Forming Toxin Aerolysin Nat.Struct.Mol.Biol. V. 11 797 2004.
ISSN: ISSN 1545-9993
PubMed: 15258571
DOI: 10.1038/NSMB804
Page generated: Thu Oct 29 07:03:38 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy