Atomistry » Uranium » PDB 2rkm-6bjy » 2veo
Atomistry »
  Uranium »
    PDB 2rkm-6bjy »
      2veo »

Uranium in PDB 2veo: X-Ray Structure of Candida Antarctica Lipase A in Its Closed State.

Enzymatic activity of X-Ray Structure of Candida Antarctica Lipase A in Its Closed State.

All present enzymatic activity of X-Ray Structure of Candida Antarctica Lipase A in Its Closed State.:
3.1.1.3;

Protein crystallography data

The structure of X-Ray Structure of Candida Antarctica Lipase A in Its Closed State., PDB code: 2veo was solved by D.J.Ericsson, A.Kasrayan, P.Johansson, T.Bergfors, A.G.Sandstrom, J.E.Backvall, S.L.Mowbray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 91.539, 91.539, 299.842, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 22.1

Uranium Binding Sites:

The binding sites of Uranium atom in the X-Ray Structure of Candida Antarctica Lipase A in Its Closed State. (pdb code 2veo). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 4 binding sites of Uranium where determined in the X-Ray Structure of Candida Antarctica Lipase A in Its Closed State., PDB code: 2veo:
Jump to Uranium binding site number: 1; 2; 3; 4;

Uranium binding site 1 out of 4 in 2veo

Go back to Uranium Binding Sites List in 2veo
Uranium binding site 1 out of 4 in the X-Ray Structure of Candida Antarctica Lipase A in Its Closed State.


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of X-Ray Structure of Candida Antarctica Lipase A in Its Closed State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1441

b:23.1
occ:0.20
OD2 A:ASP292 2.1 33.6 1.0
OE1 A:GLU298 2.8 30.9 1.0
OE2 A:GLU298 3.0 31.1 1.0
CD A:GLU298 3.1 30.3 1.0
CG A:ASP292 3.4 33.0 1.0
NE A:ARG255 4.2 25.5 1.0
OD1 A:ASP292 4.2 33.5 1.0
CB A:ASP292 4.2 32.5 1.0
CG A:GLU298 4.4 29.0 1.0
NH2 A:ARG255 4.8 26.1 1.0
CZ A:PHE251 4.9 21.3 1.0
CZ A:ARG255 5.0 26.1 1.0

Uranium binding site 2 out of 4 in 2veo

Go back to Uranium Binding Sites List in 2veo
Uranium binding site 2 out of 4 in the X-Ray Structure of Candida Antarctica Lipase A in Its Closed State.


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of X-Ray Structure of Candida Antarctica Lipase A in Its Closed State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U1442

b:26.9
occ:0.20
OE2 A:GLU314 2.2 19.6 1.0
OD2 A:ASP220 2.5 16.4 1.0
CD A:GLU314 3.3 18.9 1.0
CG A:ASP220 3.4 15.5 1.0
OD1 A:ASP220 3.7 16.5 1.0
CG A:GLU314 4.0 17.3 1.0
OE1 A:GLU314 4.3 19.4 1.0
CB A:ASP220 4.7 14.4 1.0
CG1 A:VAL311 4.8 13.4 1.0
CG A:PRO341 5.0 9.2 1.0
CB A:PRO341 5.0 9.2 1.0

Uranium binding site 3 out of 4 in 2veo

Go back to Uranium Binding Sites List in 2veo
Uranium binding site 3 out of 4 in the X-Ray Structure of Candida Antarctica Lipase A in Its Closed State.


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of X-Ray Structure of Candida Antarctica Lipase A in Its Closed State. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1441

b:31.1
occ:0.20
OD2 B:ASP292 2.1 34.3 1.0
OE1 B:GLU298 2.4 32.4 1.0
OE2 B:GLU298 3.0 32.6 1.0
CD B:GLU298 3.1 32.2 1.0
CG B:ASP292 3.3 34.0 1.0
OD1 B:ASP292 4.0 34.3 1.0
CB B:ASP292 4.2 33.6 1.0
NE B:ARG255 4.4 30.0 1.0
CG B:GLU298 4.5 31.2 1.0
NH2 B:ARG255 4.9 30.3 1.0
CZ B:PHE251 5.0 27.9 1.0

Uranium binding site 4 out of 4 in 2veo

Go back to Uranium Binding Sites List in 2veo
Uranium binding site 4 out of 4 in the X-Ray Structure of Candida Antarctica Lipase A in Its Closed State.


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of X-Ray Structure of Candida Antarctica Lipase A in Its Closed State. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U1442

b:23.9
occ:0.20
OE2 B:GLU314 2.4 20.8 1.0
OD2 B:ASP220 2.4 17.6 1.0
CG B:ASP220 3.2 16.5 1.0
OD1 B:ASP220 3.3 17.1 1.0
CD B:GLU314 3.5 19.7 1.0
CG B:GLU314 4.1 19.4 1.0
OE1 B:GLU314 4.4 20.8 1.0
CB B:ASP220 4.6 15.9 1.0
CG B:PRO341 4.9 11.2 1.0
CB B:PRO341 5.0 11.4 1.0

Reference:

D.J.Ericsson, A.Kasrayan, P.Johansson, T.Bergfors, A.G.Sandstrom, J.E.Backvall, S.L.Mowbray. X-Ray Structure of Candida Antarctica Lipase A Shows A Novel Lid Structure and A Likely Mode of Interfacial Activation. J.Mol.Biol. V. 376 109 2008.
ISSN: ISSN 0022-2836
PubMed: 18155238
DOI: 10.1016/J.JMB.2007.10.079
Page generated: Thu Oct 29 07:03:46 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy