Chemical elements
  Uranium
    Isotopes
    Energy
    Production
    Application
    Physical Properties
    Chemical Properties
    Compounds
    PDB 1anv-3pu4
      1anv
      1b05
      1b0h
      1b1h
      1b2h
      1b32
      1b3f
      1b3g
      1b3h
      1b3l
      1b40
      1b46
      1b4h
      1b4z
      1b51
      1b52
      1b58
      1b5h
      1b5i
      1b5j
      1b6h
      1b7h
      1b9j
      1bzo
      1ct9
      1efq
      1fe4
      1jet
      1jeu
      1jev
      1nci
      1ncj
      1ola
      1olc
      1qka
      1qkb
      1t9h
      1uyj
      2gic
      2olb
      2rkm
      2veo
      3c5i
      3dgc
      3l0o
      3pto
      3ptx
      3pu0
      3pu1
      3pu4

Uranium in the structure of Crystal Structure of A Vesicular Stomatitis Virus Nucleocapsid-Polyg Complex (pdb 3pu1)






The binding sites of Uranium atom in the structure of Crystal Structure of A Vesicular Stomatitis Virus Nucleocapsid-Polyg Complex (pdb code 3pu1). This binding sites where shown with 5.0 Angstroms radius around Uranium atom.
The 3pu1 structure was solved by M.LUO, T.J.GREEN, M.ROWSE, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)45.1-3.1
Space groupP21212
a (A)163.222
b (A)233.189
c (A)75.570
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)25.9
Rfree (%)30.5


Uranium Binding Sites:

Uranium binding site 1 out of 20 in 3pu1


Uranium binding site 1 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 1 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gln57, A: Asp123,

conact list:


AtomAtomDistance (A)
UNE2 A:Gln574.19
UOE1 A:Gln574.14
UCD A:Gln574.30
UCB A:Asp1234.28
UOD2 A:Asp1234.87
UOD1 A:Asp1234.50
UCG A:Asp1234.38

interactive model:


Uranium binding site 2 out of 20 in 3pu1


Uranium binding site 2 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 2 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asn251, A: Arg252, A: Glu253, A: Glu323, B: Gly239, B: Asp343,

conact list:


AtomAtomDistance (A)
UCB A:Asn2514.48
UN A:Arg2524.56
UCB A:Arg2524.74
UOE2 A:Glu2532.99
UCD A:Glu2534.17
UCG A:Glu2534.75
UOE1 A:Glu3232.61
UCB A:Glu3234.92
UOE2 A:Glu3234.30
UCD A:Glu3233.77
UCG A:Glu3234.95
UO B:Gly2394.65
UCA B:Gly2394.65
UCB B:Asp3434.74
UOD2 B:Asp3433.80
UOD1 B:Asp3432.55
UCG B:Asp3433.48

interactive model:


Uranium binding site 3 out of 20 in 3pu1


Uranium binding site 3 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 3 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp358, E: Gly380, E: Asp384,

conact list:


AtomAtomDistance (A)
UCB A:Asp3584.77
UOD2 A:Asp3583.42
UOD1 A:Asp3584.09
UCG A:Asp3583.86
UO E:Gly3804.85
UN E:Asp3844.72
UCB E:Asp3844.72
UOD2 E:Asp3843.58
UOD1 E:Asp3843.34
UCG E:Asp3843.62
UCA E:Asp3844.76

interactive model:


Uranium binding site 4 out of 20 in 3pu1


Uranium binding site 4 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 4 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp384, B: Asp358,

conact list:


AtomAtomDistance (A)
UN A:Asp3844.80
UCB A:Asp3844.84
UOD2 A:Asp3843.87
UOD1 A:Asp3843.33
UCG A:Asp3843.76
UCA A:Asp3844.79
UCB B:Asp3584.52
UOD2 B:Asp3583.06
UOD1 B:Asp3583.84
UCG B:Asp3583.56

interactive model:


Uranium binding site 5 out of 20 in 3pu1


Uranium binding site 5 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 5 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Gln57, B: Asp123, B: Ser125,

conact list:


AtomAtomDistance (A)
UNE2 B:Gln574.53
UOE1 B:Gln573.95
UCD B:Gln574.49
UN B:Asp1234.86
UCB B:Asp1233.29
UOD2 B:Asp1234.08
UC B:Asp1234.95
UOD1 B:Asp1233.23
UCG B:Asp1233.31
UCA B:Asp1233.89
UOG B:Ser1254.79

interactive model:


Uranium binding site 6 out of 20 in 3pu1


Uranium binding site 6 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 6 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Asn251, B: Arg252, B: Glu253, B: Glu323, C: Gly239, C: Asp343,

conact list:


AtomAtomDistance (A)
UCB B:Asn2514.31
UCA B:Asn2514.97
UN B:Arg2524.43
UCB B:Arg2524.76
UOE2 B:Glu2532.97
UCD B:Glu2534.15
UCG B:Glu2534.71
UOE1 B:Glu3232.56
UCB B:Glu3234.88
UOE2 B:Glu3234.31
UCD B:Glu3233.75
UCG B:Glu3234.91
UO C:Gly2394.86
UCA C:Gly2394.76
UCB C:Asp3434.46
UOD2 C:Asp3433.81
UOD1 C:Asp3433.48
UCG C:Asp3433.66

interactive model:


Uranium binding site 7 out of 20 in 3pu1


Uranium binding site 7 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 7 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Gly380, B: Glu383, B: Asp384,

conact list:


AtomAtomDistance (A)
UO B:Gly3804.85
UCB B:Glu3834.69
UC B:Glu3834.75
UN B:Asp3844.13
UCB B:Asp3844.28
UOD2 B:Asp3843.61
UOD1 B:Asp3842.91
UCG B:Asp3843.33
UCA B:Asp3844.09

interactive model:


Uranium binding site 8 out of 20 in 3pu1


Uranium binding site 8 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 8 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Gln57, C: Lys60,

conact list:


AtomAtomDistance (A)
UNE2 C:Gln574.12
UOE1 C:Gln574.72
UCD C:Gln574.55
UNZ C:Lys604.85

interactive model:


Uranium binding site 9 out of 20 in 3pu1


Uranium binding site 9 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 9 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Asn251, C: Arg252, C: Glu253, C: Glu323, D: Gly239, D: Asp343,

conact list:


AtomAtomDistance (A)
UCB C:Asn2514.46
UN C:Arg2524.53
UCB C:Arg2524.77
UOE2 C:Glu2533.06
UCD C:Glu2534.26
UCG C:Glu2534.84
UOE1 C:Glu3232.59
UCB C:Glu3234.96
UOE2 C:Glu3234.28
UCD C:Glu3233.75
UCG C:Glu3234.95
UO D:Gly2394.54
UCA D:Gly2394.63
UCB D:Asp3434.23
UOD2 D:Asp3434.37
UOD1 D:Asp3434.07
UCG D:Asp3434.01

interactive model:


Uranium binding site 10 out of 20 in 3pu1


Uranium binding site 10 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 10 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Gly380, C: Asp384, D: Asp358,

conact list:


AtomAtomDistance (A)
UO C:Gly3804.99
UN C:Asp3844.75
UCB C:Asp3844.67
UOD2 C:Asp3843.52
UOD1 C:Asp3843.15
UCG C:Asp3843.52
UCA C:Asp3844.73
UOD2 D:Asp3583.62
UOD1 D:Asp3584.33
UCG D:Asp3584.11

interactive model:


Uranium binding site 11 out of 20 in 3pu1


Uranium binding site 11 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 11 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Gln57, D: Ser122, D: Asp123, D: Ala124,

conact list:


AtomAtomDistance (A)
UNE2 D:Gln574.78
UOE1 D:Gln573.63
UCD D:Gln574.40
UO D:Ser1224.46
UC D:Ser1224.45
UN D:Asp1233.78
UCB D:Asp1232.77
UOD2 D:Asp1234.26
UC D:Asp1234.41
UOD1 D:Asp1233.46
UCG D:Asp1233.34
UCA D:Asp1233.10
UN D:Ala1244.82

interactive model:


Uranium binding site 12 out of 20 in 3pu1


Uranium binding site 12 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 12 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Asn251, D: Arg252, D: Glu253, D: Glu323,

conact list:


AtomAtomDistance (A)
UCB D:Asn2514.62
UN D:Arg2524.53
UCB D:Arg2524.56
UOE1 D:Glu2534.98
UOE2 D:Glu2532.79
UCD D:Glu2533.99
UCG D:Glu2534.62
UOE1 D:Glu3232.75
UCB D:Glu3234.97
UOE2 D:Glu3234.48
UCD D:Glu3233.91

interactive model:


Uranium binding site 13 out of 20 in 3pu1


Uranium binding site 13 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 13 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Gln57, E: Asp123,

conact list:


AtomAtomDistance (A)
UNE2 E:Gln574.01
UOE1 E:Gln574.30
UCD E:Gln574.33
UCB E:Asp1234.64
UOD1 E:Asp1234.66
UCG E:Asp1234.60

interactive model:


Uranium binding site 14 out of 20 in 3pu1


Uranium binding site 14 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 14 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Gly239, A: Asp343, E: Asn251, E: Arg252, E: Glu253, E: Glu323,

conact list:


AtomAtomDistance (A)
UO A:Gly2394.88
UCA A:Gly2394.85
UCB A:Asp3434.46
UOD2 A:Asp3432.28
UOD1 A:Asp3434.11
UCG A:Asp3433.43
UCB E:Asn2514.48
UN E:Arg2524.42
UCB E:Arg2524.59
UOE2 E:Glu2532.86
UCD E:Glu2534.05
UCG E:Glu2534.65
UOE1 E:Glu3232.74
UOE2 E:Glu3234.44
UCD E:Glu3233.90

interactive model:


Uranium binding site 15 out of 20 in 3pu1


Uranium binding site 15 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 15 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Asp358, E: Asp359,

conact list:


AtomAtomDistance (A)
UCB E:Asp3584.56
UOD2 E:Asp3583.08
UOD1 E:Asp3583.99
UCG E:Asp3583.63
UOD1 E:Asp3594.28
UCG E:Asp3594.97

interactive model:


Uranium binding site 16 out of 20 in 3pu1


Uranium binding site 16 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 16 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Arg146, R: G4, R: G5, R: G6, R: G7,

conact list:


AtomAtomDistance (A)
UNH2 D:Arg1464.56
UNH1 D:Arg1464.96
UO3' R:G44.70
UC2' R:G44.95
UO2' R:G43.66
UC3' R:G54.39
UO3' R:G54.78
UC5' R:G54.31
UC4' R:G54.93
UP R:G64.37
UOP2 R:G63.03
UC5' R:G64.51
UO5' R:G64.86
UC8 R:G74.44
UN7 R:G73.91

interactive model:


Uranium binding site 17 out of 20 in 3pu1


Uranium binding site 17 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 17 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Arg146, C: Met149, R: G13, R: G14, R: G15,

conact list:


AtomAtomDistance (A)
UNH2 C:Arg1464.54
UCE C:Met1494.38
UO3' R:G133.93
UOP1 R:G144.61
UP R:G144.51
UO5' R:G143.96
UOP1 R:G154.27
UP R:G154.01
UOP2 R:G152.87
UO5' R:G154.84

interactive model:


Uranium binding site 18 out of 20 in 3pu1


Uranium binding site 18 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 18 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: B: Arg146, B: Met149, R: G22, R: G23, R: G24, R: G25,

conact list:


AtomAtomDistance (A)
UCZ B:Arg1464.88
UNH2 B:Arg1464.29
UNH1 B:Arg1464.74
UCE B:Met1494.98
UO3' R:G224.28
UC4' R:G224.84
UOP1 R:G233.91
UP R:G234.58
UO5' R:G234.64
UOP1 R:G244.87
UP R:G244.22
UOP2 R:G242.88
UC5' R:G244.58
UO5' R:G244.81
UC8 R:G254.82
UN7 R:G254.52

interactive model:


Uranium binding site 19 out of 20 in 3pu1


Uranium binding site 19 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 19 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Arg146, A: Met149, R: G31, R: G32, R: G33, R: G34,

conact list:


AtomAtomDistance (A)
UNH2 A:Arg1464.37
UNH1 A:Arg1464.87
UCE A:Met1494.87
UO3' R:G314.39
UO2' R:G314.16
UC3' R:G324.97
UO3' R:G324.96
UO5' R:G324.39
UOP1 R:G334.87
UP R:G334.14
UOP2 R:G332.67
UN2 R:G343.06
UC2 R:G344.39

interactive model:


Uranium binding site 20 out of 20 in 3pu1


Uranium binding site 20 out of 20 in 3pu1
Click to enlarge
stereopicture of Uranium binding site 20 out of 20 in 3pu1
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Uranium in the PDB 3pu1. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Uranium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: E: Arg146, R: G40, R: G41, R: G42,

conact list:


AtomAtomDistance (A)
UCZ E:Arg1464.45
UNH2 E:Arg1463.71
UNH1 E:Arg1464.44
UO3' R:G404.54
UOP1 R:G413.99
UP R:G414.89
UC5' R:G414.63
UOP1 R:G424.99
UP R:G424.53
UOP2 R:G423.17

interactive model:




© Copyright 2008-2012 by atomistry.com