Atomistry » Uranium » PDB 2rkm-7b2w » 3tk8
Atomistry »
  Uranium »
    PDB 2rkm-7b2w »
      3tk8 »

Uranium in PDB 3tk8: Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei

Enzymatic activity of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei

All present enzymatic activity of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei:
2.3.1.117;

Protein crystallography data

The structure of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei, PDB code: 3tk8 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.257, 117.796, 123.574, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 21.7

Uranium Binding Sites:

The binding sites of Uranium atom in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei (pdb code 3tk8). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 4 binding sites of Uranium where determined in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei, PDB code: 3tk8:
Jump to Uranium binding site number: 1; 2; 3; 4;

Uranium binding site 1 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 1 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U322

b:0.5
occ:1.00
CB A:ARG226 3.3 18.5 1.0
CG B:ARG226 3.5 26.4 1.0
CG C:ARG226 3.6 24.9 1.0
CA A:ARG226 3.9 17.1 1.0
CB B:ARG226 4.0 23.9 1.0
O B:ARG226 4.2 23.2 1.0
CB C:ARG226 4.4 23.1 1.0
O B:GLY200 4.4 17.0 1.0
O A:ARG226 4.4 19.0 1.0
CA B:ARG226 4.4 21.5 1.0
O A:GLY200 4.4 15.5 1.0
C A:ARG226 4.7 17.5 1.0
CD C:ARG226 4.8 26.4 1.0
C B:ARG226 4.8 20.8 1.0
NE C:ARG226 4.8 28.0 1.0
CD B:ARG226 4.8 28.1 1.0
NE B:ARG226 5.0 30.0 1.0

Uranium binding site 2 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 2 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U323

b:0.3
occ:1.00
NE A:ARG53 3.6 25.0 1.0
NH2 A:ARG106 4.2 31.5 1.0
NH2 A:ARG53 4.3 27.4 1.0
CD A:ARG53 4.4 24.2 1.0
CZ A:ARG53 4.4 25.8 1.0
CH2 A:TRP50 4.6 18.7 1.0
CZ2 A:TRP50 4.9 19.4 1.0

Uranium binding site 3 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 3 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:

Uranium binding site 4 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 4 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:

Reference:

M.C.Clifton, A.Gardberg, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N-Succinyltransferase From Burkholderia Pseudomallei To Be Published.
Page generated: Fri Oct 11 11:15:21 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy