Atomistry » Uranium » PDB 2rkm-7b2w » 3tk8
Atomistry »
  Uranium »
    PDB 2rkm-7b2w »
      3tk8 »

Uranium in PDB 3tk8: Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei

Enzymatic activity of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei

All present enzymatic activity of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei:
2.3.1.117;

Protein crystallography data

The structure of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei, PDB code: 3tk8 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.257, 117.796, 123.574, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 21.7

Uranium Binding Sites:

The binding sites of Uranium atom in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei (pdb code 3tk8). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 4 binding sites of Uranium where determined in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei, PDB code: 3tk8:
Jump to Uranium binding site number: 1; 2; 3; 4;

Uranium binding site 1 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 1 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U322

b:0.5
occ:1.00
CB A:ARG226 3.3 18.5 1.0
CG B:ARG226 3.5 26.4 1.0
CG C:ARG226 3.6 24.9 1.0
CA A:ARG226 3.9 17.1 1.0
CB B:ARG226 4.0 23.9 1.0
O B:ARG226 4.2 23.2 1.0
CB C:ARG226 4.4 23.1 1.0
O B:GLY200 4.4 17.0 1.0
O A:ARG226 4.4 19.0 1.0
CA B:ARG226 4.4 21.5 1.0
O A:GLY200 4.4 15.5 1.0
C A:ARG226 4.7 17.5 1.0
CD C:ARG226 4.8 26.4 1.0
C B:ARG226 4.8 20.8 1.0
NE C:ARG226 4.8 28.0 1.0
CD B:ARG226 4.8 28.1 1.0
NE B:ARG226 5.0 30.0 1.0

Uranium binding site 2 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 2 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U323

b:0.3
occ:1.00
NE A:ARG53 3.6 25.0 1.0
NH2 A:ARG106 4.2 31.5 1.0
NH2 A:ARG53 4.3 27.4 1.0
CD A:ARG53 4.4 24.2 1.0
CZ A:ARG53 4.4 25.8 1.0
CH2 A:TRP50 4.6 18.7 1.0
CZ2 A:TRP50 4.9 19.4 1.0

Uranium binding site 3 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 3 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:

Uranium binding site 4 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 4 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:

Reference:

M.C.Clifton, A.Gardberg, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N-Succinyltransferase From Burkholderia Pseudomallei To Be Published.
Page generated: Wed Dec 16 02:29:55 2020

Last articles

Cl in 6COG
Cl in 6CST
Cl in 6CTW
Cl in 6CTZ
Cl in 6CTT
Cl in 6CSP
Cl in 6CU9
Cl in 6CTX
Cl in 6CTU
Cl in 6CTP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy