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Uranium in PDB 3tk8: Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei

Enzymatic activity of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei

All present enzymatic activity of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei:
2.3.1.117;

Protein crystallography data

The structure of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei, PDB code: 3tk8 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.257, 117.796, 123.574, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 21.7

Uranium Binding Sites:

The binding sites of Uranium atom in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei (pdb code 3tk8). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 4 binding sites of Uranium where determined in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei, PDB code: 3tk8:
Jump to Uranium binding site number: 1; 2; 3; 4;

Uranium binding site 1 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 1 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U322

b:0.5
occ:1.00
CB A:ARG226 3.3 18.5 1.0
CG B:ARG226 3.5 26.4 1.0
CG C:ARG226 3.6 24.9 1.0
CA A:ARG226 3.9 17.1 1.0
CB B:ARG226 4.0 23.9 1.0
O B:ARG226 4.2 23.2 1.0
CB C:ARG226 4.4 23.1 1.0
O B:GLY200 4.4 17.0 1.0
O A:ARG226 4.4 19.0 1.0
CA B:ARG226 4.4 21.5 1.0
O A:GLY200 4.4 15.5 1.0
C A:ARG226 4.7 17.5 1.0
CD C:ARG226 4.8 26.4 1.0
C B:ARG226 4.8 20.8 1.0
NE C:ARG226 4.8 28.0 1.0
CD B:ARG226 4.8 28.1 1.0
NE B:ARG226 5.0 30.0 1.0

Uranium binding site 2 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 2 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U323

b:0.3
occ:1.00
NE A:ARG53 3.6 25.0 1.0
NH2 A:ARG106 4.2 31.5 1.0
NH2 A:ARG53 4.3 27.4 1.0
CD A:ARG53 4.4 24.2 1.0
CZ A:ARG53 4.4 25.8 1.0
CH2 A:TRP50 4.6 18.7 1.0
CZ2 A:TRP50 4.9 19.4 1.0

Uranium binding site 3 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 3 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:

Uranium binding site 4 out of 4 in 3tk8

Go back to Uranium Binding Sites List in 3tk8
Uranium binding site 4 out of 4 in the Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N- Succinyltransferase From Burkholderia Pseudomallei within 5.0Å range:

Reference:

M.C.Clifton, A.Gardberg, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Structure of A 2,3,4,5-Tetrahydropyridine-2,6-Dicarboxylate N-Succinyltransferase From Burkholderia Pseudomallei To Be Published.
Page generated: Wed Dec 16 02:29:55 2020

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