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Uranium in PDB 4fzp: Crystal Structure of the Uranyl Binding Protein Complexed with Uranyl

Protein crystallography data

The structure of Crystal Structure of the Uranyl Binding Protein Complexed with Uranyl, PDB code: 4fzp was solved by L.Zhou, L.Zhang, C.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.20 / 1.29
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.032, 46.929, 65.756, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 18.8

Uranium Binding Sites:

The binding sites of Uranium atom in the Crystal Structure of the Uranyl Binding Protein Complexed with Uranyl (pdb code 4fzp). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 2 binding sites of Uranium where determined in the Crystal Structure of the Uranyl Binding Protein Complexed with Uranyl, PDB code: 4fzp:
Jump to Uranium binding site number: 1; 2;

Uranium binding site 1 out of 2 in 4fzp

Go back to Uranium Binding Sites List in 4fzp
Uranium binding site 1 out of 2 in the Crystal Structure of the Uranyl Binding Protein Complexed with Uranyl


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Crystal Structure of the Uranyl Binding Protein Complexed with Uranyl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:U101

b:14.5
occ:0.33
U A:IUM101 0.0 14.5 0.3
O1 A:IUM101 1.8 18.4 0.3
O2 A:IUM101 1.8 20.3 0.3
OE2 A:GLU8 2.7 25.3 1.0
OE1 A:GLU8 2.7 23.6 1.0
O A:HOH264 3.0 39.7 1.0
CD A:GLU8 3.1 23.4 1.0
O A:HOH224 4.3 34.3 1.0
NH2 A:ARG4 4.3 24.5 0.5
CZ A:ARG4 4.4 23.5 0.5
NE A:ARG4 4.5 28.7 0.5
CG A:ARG4 4.5 18.8 0.5
NE A:ARG4 4.5 21.7 0.5
CG A:GLU8 4.5 16.3 1.0
O A:HOH260 4.6 36.3 1.0
CD A:ARG4 4.6 20.1 0.5
O A:HOH232 4.6 37.1 1.0
CG A:ARG4 4.7 19.1 0.5
CZ A:ARG4 4.8 23.4 0.5
CD A:ARG4 4.8 25.8 0.5
NH1 A:ARG4 4.9 23.4 0.5

Uranium binding site 2 out of 2 in 4fzp

Go back to Uranium Binding Sites List in 4fzp
Uranium binding site 2 out of 2 in the Crystal Structure of the Uranyl Binding Protein Complexed with Uranyl


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Crystal Structure of the Uranyl Binding Protein Complexed with Uranyl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:U101

b:16.6
occ:0.33
U B:IUM101 0.0 16.6 0.3
O1 B:IUM101 1.8 14.7 0.3
O2 B:IUM101 1.8 12.3 0.3
OD1 B:ASP68 2.4 16.6 1.0
O B:HOH253 2.7 30.5 1.0
OE1 B:GLU17 2.7 27.6 1.0
OE2 B:GLU17 2.9 38.5 1.0
OD2 B:ASP68 3.1 15.0 1.0
CG B:ASP68 3.1 13.2 1.0
O B:HOH227 3.1 31.0 1.0
CD B:GLU17 3.2 28.4 1.0
NH1 B:ARG71 3.8 36.5 1.0
O B:GLU64 4.5 9.8 1.0
CB B:ASP68 4.5 12.2 1.0
CB B:GLU64 4.7 9.4 1.0
CG B:GLU17 4.7 20.0 1.0
CG B:GLU64 4.7 11.4 1.0
O B:HOH204 4.8 18.8 1.0
CA B:GLU64 4.9 8.7 1.0
CD B:ARG71 4.9 20.6 1.0

Reference:

L.Zhou, M.Bosscher, C.Zhang, S.Ozcubukcu, L.Zhang, W.Zhang, C.J.Li, J.Liu, M.P.Jensen, L.Lai, C.He. A Protein Engineered to Bind Uranyl Selectively and with Femtomolar Affinity. Nat Chem V. 6 236 2014.
PubMed: 24557139
DOI: 10.1038/NCHEM.1856
Page generated: Thu Oct 29 07:03:59 2020

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