Uranium in PDB 1qkb: Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk

The structure of Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk, PDB code: 1qkb was solved by J.R.H.Tame, S.H.Sleigh, A.J.Wilkinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	109.730, 75.780, 70.270, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 21.5

The binding sites of Uranium atom in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk (pdb code 1qkb). This binding sites where shown within 5.0 Angstroms radius around Uranium atom.
In total 8 binding sites of Uranium where determined in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk, PDB code: 1qkb:
Jump to Uranium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Uranium binding site 1 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 1 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk within 5.0Å range: probe atom residue distance (Å) B Occ A:U601 b:9.8 occ:0.83 OD2 A:ASP323 2.3 9.9 1.0 O A:ACT611 2.4 8.3 1.0 O A:ACT610 2.4 14.8 1.0 CG A:ASP323 3.2 11.3 1.0 C A:ACT611 3.2 12.2 1.0 C A:ACT610 3.3 11.7 1.0 OD1 A:ASP323 3.5 12.7 1.0 CH3 A:ACT611 3.5 13.7 1.0 CH3 A:ACT610 3.5 12.7 1.0 O A:HOH724 3.9 26.4 1.0 O A:HOH1016 4.2 29.2 1.0 O A:HOH1021 4.3 36.5 1.0 OXT A:ACT611 4.5 12.2 1.0 OXT A:ACT610 4.5 16.2 1.0 CB A:ASP323 4.6 12.1 1.0 NZ A:LYS157 4.7 10.7 1.0 O A:HOH1073 4.9 22.9 1.0

Uranium binding site 2 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 2 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk within 5.0Å range: probe atom residue distance (Å) B Occ A:U602 b:14.1 occ:0.85 O A:ACT613 2.1 18.6 1.0 O A:ACT612 2.4 11.9 1.0 O A:HOH704 2.4 14.0 1.0 O A:HOH736 2.5 12.0 1.0 C A:ACT613 3.2 19.6 1.0 C A:ACT612 3.3 16.5 1.0 CH3 A:ACT613 3.5 17.0 1.0 CH3 A:ACT612 3.7 16.6 1.0 U A:IUM603 4.2 14.9 0.8 O A:HOH916 4.2 12.6 1.0 OXT A:ACT613 4.3 21.9 1.0 OXT A:ACT612 4.5 14.3 1.0 O A:HOH1024 4.5 28.6 1.0 O A:ACT615 4.6 17.1 1.0 O A:HOH716 4.6 30.7 1.0 O A:HOH737 4.8 13.9 1.0 O A:HOH1016 4.9 29.2 1.0

Uranium binding site 3 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 3 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk within 5.0Å range: probe atom residue distance (Å) B Occ A:U603 b:14.9 occ:0.81 O A:HOH704 2.4 14.0 1.0 O A:ACT615 2.4 17.1 1.0 O A:HOH737 2.4 13.9 1.0 O A:ACT614 2.5 19.2 1.0 C A:ACT615 3.3 22.8 1.0 C A:ACT614 3.4 21.6 1.0 CH3 A:ACT615 3.5 22.7 1.0 CH3 A:ACT614 3.6 22.4 1.0 U A:IUM602 4.2 14.1 0.8 OD1 A:ASP459 4.3 36.1 1.0 OD2 A:ASP459 4.3 35.8 1.0 OXT A:ACT615 4.5 22.2 1.0 O A:HOH716 4.5 30.7 1.0 CG A:ASP459 4.5 34.9 1.0 OXT A:ACT614 4.6 20.1 1.0 O A:HOH736 4.6 12.0 1.0 O A:ACT612 4.7 11.9 1.0 O A:HOH878 4.9 23.8 1.0 CB A:PRO153 4.9 13.3 1.0 O A:HOH1024 4.9 28.6 1.0

Uranium binding site 4 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 4 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk within 5.0Å range: probe atom residue distance (Å) B Occ A:U604 b:16.4 occ:0.66 OE2 A:GLU251 2.3 24.6 1.0 OXT A:ACT609 2.4 18.4 1.0 OD1 A:ASP369 2.5 28.2 1.0 O A:HOH1096 2.8 22.6 1.0 CH3 A:ACT609 3.1 20.4 1.0 C A:ACT609 3.1 22.0 1.0 CD A:GLU251 3.5 27.2 1.0 CG A:ASP369 3.7 27.0 1.0 CG A:GLU251 4.3 26.6 1.0 OE1 A:GLU251 4.4 26.3 1.0 O A:ACT609 4.4 22.8 1.0 OD2 A:ASP369 4.5 30.9 1.0 O A:HOH920 4.7 35.4 1.0 CG2 A:VAL230 4.7 16.2 1.0 CB A:ASP369 4.8 23.3 1.0

Uranium binding site 5 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 5 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk within 5.0Å range: probe atom residue distance (Å) B Occ A:U605 b:16.4 occ:0.87 OD2 A:ASP362 2.3 8.1 1.0 OD2 A:ASP410 2.4 12.5 1.0 CG A:ASP362 3.2 11.9 1.0 CG A:ASP410 3.4 14.4 1.0 OD1 A:ASP410 3.7 17.4 1.0 OD1 A:ASP362 3.8 12.9 1.0 NZ A:LYS281 4.0 33.0 1.0 N A:ASP362 4.2 14.2 1.0 CB A:ASP362 4.3 12.9 1.0 O A:HOH722 4.6 19.5 1.0 CB A:ASP410 4.7 13.1 1.0 CA A:PHE361 4.8 16.8 1.0 C A:PHE361 4.9 16.2 1.0 CA A:ASP362 4.9 13.6 1.0

Uranium binding site 6 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 6 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk within 5.0Å range: probe atom residue distance (Å) B Occ A:U606 b:26.2 occ:0.41 OXT A:HIS517 2.7 21.7 1.0 C A:HIS517 3.6 21.0 1.0 O A:HIS517 3.7 22.3 1.0 O A:HOH709 3.8 31.4 1.0 U A:IUM607 4.1 27.5 0.4 O A:HOH975 4.7 24.6 1.0

Uranium binding site 7 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 7 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk within 5.0Å range: probe atom residue distance (Å) B Occ A:U607 b:27.5 occ:0.36 U A:IUM606 4.1 26.2 0.4 O A:HOH1076 4.5 23.9 1.0 O A:HOH1123 4.9 31.0 1.0

Uranium binding site 8 out of 8 in the Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk


Mono view


Stereo pair view

A full contact list of Uranium with other atoms in the U binding site number 8 of Oligo-Peptide Binding Protein (Oppa) Complexed with Kvk within 5.0Å range: probe atom residue distance (Å) B Occ A:U608 b:31.0 occ:0.44 OD2 A:ASP11 2.5 31.4 1.0 CG A:ASP11 3.6 28.3 1.0 CB A:ASP11 3.9 25.2 1.0 OD1 A:ASP11 4.6 28.2 1.0

S.H.Sleigh, P.R.Seavers, A.J.Wilkinson, J.E.Ladbury, J.R.H.Tame. Crystallographic and Calorimetric Analysis of Peptide Binding to Oppa Protein J.Mol.Biol. V. 291 393 1999.
ISSN: ISSN 0022-2836
PubMed: 10438628
DOI: 10.1006/JMBI.1999.2929